View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3413_low_10 (Length: 354)
Name: NF3413_low_10
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3413_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 47456176 - 47455849
Alignment:
| Q |
18 |
gttatatatctaacctatactgatacataaatgcaattatttaatagtttaggggatattgatcattacctaagcttggtagcttctcctcttcttattt |
117 |
Q |
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| T |
47456176 |
gttatatatctaacctatactgatacataaatgcaattatttaatagtttaggggatattgatcattacctaagcttggtagcttctcctcttcttattt |
47456077 |
T |
|
| Q |
118 |
tcttccattgtgatacacgataccgaaatatatattgcttatagtaattgctattattttccttgcttgtgtttaaatacttgggtttgaaatatcatca |
217 |
Q |
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| T |
47456076 |
tcttccattgtgatacacgatacagaaatatatattgcttatagtaattgctattattttccttgcttgtg-ttaaatacttgagtttgaaataccatca |
47455978 |
T |
|
| Q |
218 |
ctgttgagcttccaaaacaccatatctttagactccctttatcaggagcattcaaatttagcatggagttgatgatatatattagaggcaaaacattacg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47455977 |
ctgttgagcttccaaaacaccatatctttagactccctttatcaggagcattcaaatttagcatggagttgatgatatatattagaggcaaaacatcacg |
47455878 |
T |
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| Q |
318 |
aaaaatttgcaaattctaaactctctgct |
346 |
Q |
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| T |
47455877 |
aaaaatttgcaaattctaaactcgctgct |
47455849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 15128271 - 15128364
Alignment:
| Q |
78 |
gatcattacctaagcttggtagcttctcctcttcttattttcttccattgtgatacacgataccgaaatatatattgcttatagtaattgctat |
171 |
Q |
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| T |
15128271 |
gatcattccctaagctttgtagcttctgctcttgttattttcttctcttttgatacatgatacggaaatacatattgctgatagcaattgctat |
15128364 |
T |
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