View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3413_low_11 (Length: 340)
Name: NF3413_low_11
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3413_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 4 - 340
Target Start/End: Complemental strand, 34145089 - 34144753
Alignment:
| Q |
4 |
cgagtgagaagaagaacagtacaatgtttcgcaatcaacaagtacaagtgtgtagttcttgtactcaccactgtagattctttgatcactttcaacgaac |
103 |
Q |
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| T |
34145089 |
cgagagagaataagaacagtgcaatggttcgcaatcaacaagtaaaagtgtgtagttcttgtactcaccactgtagattctttgatcactttcaacgaac |
34144990 |
T |
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| Q |
104 |
aaaatctacctcgcccaactctttctacaacctcatgctttatcaacgagatttccaagttttggtacttcaacatcttcctcaataatttactttcctt |
203 |
Q |
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| T |
34144989 |
aaaatctacctcgcccaactctttctacaacctcatgctttatcaacgagatttccaagttttggtacttcaacatcttcctcaataatttactttcctt |
34144890 |
T |
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| Q |
204 |
ttcagtgttgaaacaaaatgttaagaacatgcatgttacagatcttcttgcaaaatgtgaatctatttttgagtttgtatttatgatgatgctgcatatt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34144889 |
ttcagtgttgaaacaaaatgttaagaacatgcatgttacagatcttcttgcaaaatgtgaatctgtttttgagtttgtatttatgatgatgctgcatatt |
34144790 |
T |
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| Q |
304 |
tttaacatctttttaaactgactgcaggatcttcctt |
340 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
34144789 |
tttaacatctttttaaactgactgcaggatcttcctt |
34144753 |
T |
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