View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3413_low_13 (Length: 287)
Name: NF3413_low_13
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3413_low_13 |
 | |
|
| [»] chr6 (29 HSPs) |
| |
|
| [»] scaffold0349 (2 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0277 (2 HSPs) |
| |
|
| [»] scaffold0419 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 27592706 - 27592992
Alignment:
| Q |
1 |
ctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagattattgtaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27592706 |
ctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagattattgtaaaat |
27592805 |
T |
|
| Q |
101 |
tgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27592806 |
tgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctgg |
27592905 |
T |
|
| Q |
201 |
ctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27592906 |
ctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcacca |
27592992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 27679447 - 27679161
Alignment:
| Q |
1 |
ctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagattattgtaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27679447 |
ctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagattattgtaaaat |
27679348 |
T |
|
| Q |
101 |
tgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27679347 |
tgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctgg |
27679248 |
T |
|
| Q |
201 |
ctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27679247 |
ctcagagcctttttccatccttgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcacca |
27679161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 27706089 - 27706374
Alignment:
| Q |
1 |
ctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagattattgtaaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
27706089 |
ctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttccctttaaac-tttaagatgagattattgtgaaat |
27706187 |
T |
|
| Q |
101 |
tgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27706188 |
tgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctgg |
27706287 |
T |
|
| Q |
201 |
ctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27706288 |
ctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcacca |
27706374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 27677302 - 27677586
Alignment:
| Q |
1 |
ctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagattattgtaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27677302 |
ctaactatttcgacatataaataactaatagtactt--ttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagattattgtgaaat |
27677399 |
T |
|
| Q |
101 |
tgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27677400 |
tgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctgg |
27677499 |
T |
|
| Q |
201 |
ctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27677500 |
ctcagagcctctttccatccctgcaacctctccatgcttttcggatcattttgaaacctcttttcatgctcagccaatgcttcacca |
27677586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 26802940 - 26802657
Alignment:
| Q |
1 |
ctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagattattgtaaaat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
26802940 |
ctaactatttcaacatataaataactaata---cttgtttaaaaacgtatataagaaaggtatttcccatttaacctttaagatgagattattgggaaat |
26802844 |
T |
|
| Q |
101 |
tgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctgg |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26802843 |
tgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctgg |
26802744 |
T |
|
| Q |
201 |
ctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26802743 |
ctcagagccactttccatcgctccaacctctccatgttatccttatcattttgaaaccttttttcatgctcagccaatgcttcacca |
26802657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 118 - 282
Target Start/End: Original strand, 27698297 - 27698461
Alignment:
| Q |
118 |
aatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttcca |
217 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27698297 |
aatacaaaagggaaatataggatttaagtaaagttgggtacctgggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttcca |
27698396 |
T |
|
| Q |
218 |
tccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgctt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27698397 |
tccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgctt |
27698461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 27604391 - 27604672
Alignment:
| Q |
1 |
ctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtattt---cccttttaacctttaagatgagattattgtaa |
97 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||| | | ||||||||| || |||||||||||| |
|
|
| T |
27604391 |
ctaactattttgacatataaataactaata---cttgtttaaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggt |
27604487 |
T |
|
| Q |
98 |
aattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcc |
197 |
Q |
| |
|
||||||| ||||| ||| |||||| ||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27604488 |
aattgaaattgaataaagaaaatacaaaagggaaaaataggatttatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcc |
27604587 |
T |
|
| Q |
198 |
tggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgctt |
282 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| ||||| | | ||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
27604588 |
tggctcagagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaacctttttttatgctcagccaatgctt |
27604672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 27718218 - 27718351
Alignment:
| Q |
154 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||| |
|
|
| T |
27718218 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttg |
27718317 |
T |
|
| Q |
254 |
aaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27718318 |
aaacctcttttcatgctcagccaatgcttcacca |
27718351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 27610841 - 27610974
Alignment:
| Q |
154 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
27610841 |
ggtacccaggaggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttg |
27610940 |
T |
|
| Q |
254 |
aaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27610941 |
aaacctcttttcatgctcagccaatgcttcacca |
27610974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 287
Target Start/End: Complemental strand, 26862039 - 26861828
Alignment:
| Q |
70 |
tttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggact |
169 |
Q |
| |
|
|||||| || |||||||||||| | || ||| ||| || |||||| |||||| |||| |||| ||||||||| || |||| |||||||||||| || |
|
|
| T |
26862039 |
tttaactttaaagatgagattactctagaatagaaattaaagaaagaaaatataaaaaggaa---taggatttatgttaagtggggtacccagga---ct |
26861946 |
T |
|
| Q |
170 |
atcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgc |
269 |
Q |
| |
|
| ||||||||| |||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||| | | ||||||||||||||| ||||||||| |
|
|
| T |
26861945 |
aaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgttatccatatcattttgaaaccttttttcatgc |
26861846 |
T |
|
| Q |
270 |
tcagccaatgcttcacca |
287 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
26861845 |
ttagccaatgcttcacca |
26861828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 27427461 - 27427578
Alignment:
| Q |
170 |
atcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgc |
269 |
Q |
| |
|
||||||||||| || ||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
27427461 |
atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc |
27427560 |
T |
|
| Q |
270 |
tcagccaatgcttcacca |
287 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
27427561 |
tcagccaatgctttacca |
27427578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 287
Target Start/End: Complemental strand, 26884564 - 26884380
Alignment:
| Q |
100 |
ttgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctg |
199 |
Q |
| |
|
||||| || |||||| |||||| |||| | |||||| |||||||||||||| || |||||| || ||| |||||||||||||||||||||| | || |
|
|
| T |
26884564 |
ttgaaattaaagaaagaaaatataaaaaaggaaaatatgatttaagtaaagtgggatacccaaga---ctaaaatggtagccggacaagttagcaacttg |
26884468 |
T |
|
| Q |
200 |
gctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||| | | ||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
26884467 |
cctcatagccattttccatcgctgcaacctctccatgttatccttatcattttgaaaccttttttcatggtcagccaatgcttcacca |
26884380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 287
Target Start/End: Original strand, 27530983 - 27531169
Alignment:
| Q |
98 |
aattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcc |
197 |
Q |
| |
|
||||||| || |||||| |||||| ||||||||||||||||||||||||||||| || |||||| | ||| ||| | ||| ||||||||||| || |
|
|
| T |
27530983 |
aattgaaattaaagaaagaaaatataaaagggaaaaataggatttaagtaaagtgggctacccatgtt---tataatgctggccagacaagttagccgct |
27531079 |
T |
|
| Q |
198 |
tggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| |||| | | ||||||||||||| | |||| |||| |||| |||||||||||| |
|
|
| T |
27531080 |
tggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaacttttttttatgcacagctaatgcttcacca |
27531169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 287
Target Start/End: Complemental strand, 28786616 - 28786493
Alignment:
| Q |
164 |
aggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt |
263 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
28786616 |
aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt |
28786517 |
T |
|
| Q |
264 |
tcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
28786516 |
tcatgcccagccaatgcttcacca |
28786493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 287
Target Start/End: Complemental strand, 28792737 - 28792614
Alignment:
| Q |
164 |
aggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt |
263 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
28792737 |
aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt |
28792638 |
T |
|
| Q |
264 |
tcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
28792637 |
tcatgcccagccaatgcttcacca |
28792614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 270
Target Start/End: Complemental strand, 25538931 - 25538772
Alignment:
| Q |
111 |
gaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgt |
210 |
Q |
| |
|
||||||||||| | || ||||||| | |||||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | ||||| |
|
|
| T |
25538931 |
gaaataaaatatagaaaggaaaaacaagatttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagcta |
25538832 |
T |
|
| Q |
211 |
ctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgct |
270 |
Q |
| |
|
|||||| |||| | ||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
25538831 |
tcttccattgacgcaatcgctccatgtttttctcattattttgaaacctctcttcatgct |
25538772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 287
Target Start/End: Complemental strand, 28781477 - 28781354
Alignment:
| Q |
164 |
aggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt |
263 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
28781477 |
aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt |
28781378 |
T |
|
| Q |
264 |
tcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
28781377 |
tcatgtccagccaatgcttcacca |
28781354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 270
Target Start/End: Complemental strand, 25580112 - 25579951
Alignment:
| Q |
109 |
aagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagc |
208 |
Q |
| |
|
||||||||||||| | || ||||||| | | |||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | ||||| |
|
|
| T |
25580112 |
aagaaataaaatatagaaaggaaaaagaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagc |
25580013 |
T |
|
| Q |
209 |
gtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgct |
270 |
Q |
| |
|
|||||| |||| | ||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
25580012 |
tatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgct |
25579951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 270
Target Start/End: Complemental strand, 26143256 - 26143097
Alignment:
| Q |
111 |
gaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgt |
210 |
Q |
| |
|
||||||||||| | || ||||||| | | |||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | ||||| |
|
|
| T |
26143256 |
gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagcta |
26143157 |
T |
|
| Q |
211 |
ctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgct |
270 |
Q |
| |
|
|||||| |||| | ||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
26143156 |
tcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgct |
26143097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 27724775 - 27724817
Alignment:
| Q |
245 |
atcattttgaaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27724775 |
atcattttgaaacctcttttcatgctcagccaatgcttcacca |
27724817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 26056290 - 26056232
Alignment:
| Q |
138 |
gatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc |
196 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
26056290 |
gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagc |
26056232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 26076260 - 26076202
Alignment:
| Q |
138 |
gatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc |
196 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
26076260 |
gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagc |
26076202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 26646862 - 26646773
Alignment:
| Q |
116 |
aaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagc |
208 |
Q |
| |
|
|||||| |||| ||||||| | | |||||||||||| |||||||||||| |||| |||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
26646862 |
aaaatataaaaaggaaaaacaaggtttaagtaaagtggggtacccagga---ctataatggtatccggacaagttagcagcttgggtcagagc |
26646773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 26752830 - 26752741
Alignment:
| Q |
116 |
aaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagc |
208 |
Q |
| |
|
|||||| |||| ||||||| | | |||||||||||| |||||||||||| |||| |||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
26752830 |
aaaatataaaaaggaaaaacaaggtttaagtaaagtggggtacccagga---ctataatggtatccggacaagttagcagcttgggtcagagc |
26752741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 25482133 - 25482048
Alignment:
| Q |
111 |
gaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc |
196 |
Q |
| |
|
||||||||||| | || ||||||| | | |||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
25482133 |
gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtactcatgaggactataatgatagccggacaaattagcagc |
25482048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 25511333 - 25511271
Alignment:
| Q |
109 |
aagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactat |
171 |
Q |
| |
|
||||||||||||| |||| |||||| | |||||||||||||| ||||||||| ||||||||| |
|
|
| T |
25511333 |
aagaaataaaatataaaaaagaaaaacaagatttaagtaaagtagggtacccatgaggactat |
25511271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 287
Target Start/End: Complemental strand, 27214769 - 27214635
Alignment:
| Q |
153 |
gggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcatttt |
252 |
Q |
| |
|
|||||| ||| |||||||| ||| ||||| || ||||||||||| ||| | ||||| |||||| |||||||| ||||||||||| | | ||||| |
|
|
| T |
27214769 |
gggtactcagaaggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttatttt |
27214670 |
T |
|
| Q |
253 |
gaaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
||||||||| |||||||| ||| | ||||||||| |
|
|
| T |
27214669 |
gaaacctctcttcatgcttagcaagcgcttcacca |
27214635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 27234459 - 27234593
Alignment:
| Q |
153 |
gggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcatttt |
252 |
Q |
| |
|
|||||| ||| |||||||| ||| ||||| || ||||||||||| ||| | ||||| |||||| |||||||| ||||||||||| | | ||||| |
|
|
| T |
27234459 |
gggtactcagaaggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttatttt |
27234558 |
T |
|
| Q |
253 |
gaaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
||||||||| |||||||| ||| | ||||||||| |
|
|
| T |
27234559 |
gaaacctctcttcatgcttagcaagcgcttcacca |
27234593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 27698271 - 27698300
Alignment:
| Q |
1 |
ctaactatttcgacatataaataactaata |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27698271 |
ctaactatttcgacatataaataactaata |
27698300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 14195 - 14328
Alignment:
| Q |
154 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14195 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttg |
14294 |
T |
|
| Q |
254 |
aaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
14295 |
aaacctcttttcatgctcagccaatgcttcacca |
14328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 154 - 287
Target Start/End: Original strand, 3259 - 3393
Alignment:
| Q |
154 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatg-tttttcggatcatttt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
3259 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttttcggatcatttt |
3358 |
T |
|
| Q |
253 |
gaaacctcttttcatgctcagccaatgcttcacca |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3359 |
gaaacctcttttcatgctcagccaatgcttcacca |
3393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 59902 - 59785
Alignment:
| Q |
170 |
atcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgc |
269 |
Q |
| |
|
||||||||||| || ||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
59902 |
atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc |
59803 |
T |
|
| Q |
270 |
tcagccaatgcttcacca |
287 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
59802 |
tcagccaatgctttacca |
59785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 18074094 - 18073977
Alignment:
| Q |
170 |
atcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgc |
269 |
Q |
| |
|
||||||||||| || ||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
18074094 |
atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc |
18073995 |
T |
|
| Q |
270 |
tcagccaatgcttcacca |
287 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
18073994 |
tcagccaatgctttacca |
18073977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 173 - 287
Target Start/End: Original strand, 4529 - 4643
Alignment:
| Q |
173 |
atggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctca |
272 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
4529 |
atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca |
4628 |
T |
|
| Q |
273 |
gccaatgcttcacca |
287 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4629 |
gccaatgcttcacca |
4643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 287
Target Start/End: Original strand, 13490 - 13604
Alignment:
| Q |
173 |
atggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctca |
272 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||| ||||| | ||||||||| ||| |||||||||||||||||||||||| || |
|
|
| T |
13490 |
atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca |
13589 |
T |
|
| Q |
273 |
gccaatgcttcacca |
287 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13590 |
gccaatgcttcacca |
13604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 287
Target Start/End: Complemental strand, 7854 - 7740
Alignment:
| Q |
173 |
atggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctca |
272 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||| ||||| | ||||||||| ||| |||||||||||||||||||||||| || |
|
|
| T |
7854 |
atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca |
7755 |
T |
|
| Q |
273 |
gccaatgcttcacca |
287 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7754 |
gccaatgcttcacca |
7740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 28127492 - 28127547
Alignment:
| Q |
138 |
gatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc |
196 |
Q |
| |
|
|||||||||| ||| |||||||| ||| |||| |||||||||||||||||||||||| |
|
|
| T |
28127492 |
gatttaagtatagtagggtaccctgga---ctataatggtagccggacaagttagcagc |
28127547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University