View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3413_low_15 (Length: 283)

Name: NF3413_low_15
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3413_low_15
NF3413_low_15
[»] scaffold0831 (1 HSPs)
scaffold0831 (18-273)||(2004-2259)
[»] chr8 (4 HSPs)
chr8 (37-230)||(26531470-26531663)
chr8 (59-167)||(27183092-27183200)
chr8 (79-167)||(27231085-27231173)
chr8 (90-172)||(31135826-31135908)
[»] chr4 (4 HSPs)
chr4 (49-236)||(1326371-1326558)
chr4 (82-236)||(4875996-4876150)
chr4 (142-275)||(44185487-44185620)
chr4 (115-151)||(20425791-20425827)
[»] chr3 (1 HSPs)
chr3 (66-275)||(5387572-5387781)
[»] chr6 (6 HSPs)
chr6 (109-170)||(32745707-32745768)
chr6 (109-170)||(29123296-29123357)
chr6 (108-169)||(29136445-29136506)
chr6 (117-170)||(29144444-29144497)
chr6 (109-173)||(29012044-29012108)
chr6 (114-174)||(34259100-34259160)
[»] scaffold0129 (1 HSPs)
scaffold0129 (64-174)||(9585-9695)
[»] chr1 (2 HSPs)
chr1 (60-158)||(19226210-19226308)
chr1 (102-151)||(51869173-51869222)
[»] chr5 (1 HSPs)
chr5 (59-175)||(9763499-9763615)
[»] chr2 (1 HSPs)
chr2 (126-174)||(7429837-7429885)


Alignment Details
Target: scaffold0831 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 2259 - 2004
Alignment:
Q  18 gttagtagtagtaactatgttcctgacgatgtttccttcgttattttctccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2259 gttagtagtagtaactatgttcctgacgatgtttccttcgttattttctccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcat 2160  T
Q  118 ggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatggcacatgtcttttcctaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2159 ggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatgacacatgtcttttcctaaa 2060  T
Q  218 tataaaggagatactgccatatgatcaacatggttccactttgtatttcctctctg 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2059 tataaaggagatactgccatatgatcaacatggttccactttgtatttcctctctg 2004  T

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Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 37 - 230
Target Start/End: Original strand, 26531470 - 26531663
Alignment:
Q  37 ttcctgacgatgtttccttcgttattttctccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttatttgaaga 136  Q
    ||||||| |||||||||||| |||||||||| |||||| | || |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |    
T  26531470 ttcctgaagatgtttccttcattattttctctaaactatccctcaaatctctcaagcggtttacttgtgcgtgcaaatcatggtctcttttatttgaaaa 26531569  T
Q  137 tcctcatttcatgaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatggcacatgtcttttcctaaatataaaggagata 230  Q
     |||  ||| ||||| ||||| ||||| |||||||||| ||||||||  |||||||||||   ||| | ||| || ||||||||||||||||||    
T  26531570 ccctagttttatgaatatgttccgcaaaaatttcatatctatgcatcagtcattgtacaacaacacttatctctttctaaatataaaggagata 26531663  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 27183092 - 27183200
Alignment:
Q  59 tattttctccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgttt 158  Q
    |||| |||| ||||| ||| |||||||||||||||||||||||||||  | ||| |||||||||||||||||| || | ||| ||||||| ||  ||||     
T  27183092 tattctctctaaactccctattaaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttc 27183191  T
Q  159 cgcaacaat 167  Q
    |||||||||    
T  27183192 cgcaacaat 27183200  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 27231173 - 27231085
Alignment:
Q  79 ttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaat 167  Q
    |||||||||||||||||||||||||||  | ||| |||||||||||||||||| || | ||| ||||||| ||  |||| |||||||||    
T  27231173 ttaaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccgcaacaat 27231085  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 31135908 - 31135826
Alignment:
Q  90 aagcgatttacttgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttcat 172  Q
    ||||||||| | |||| ||||||  |||||||||||||||||||| | |||  ||| ||||| ||||| ||||||||| ||||    
T  31135908 aagcgatttgcatgtgtatgcaaaccatggtctcttttatttgaaaaccctatttttatgaacatgttccgcaacaatctcat 31135826  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 1326371 - 1326558
Alignment:
Q  49 tttccttcgttattttctccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcat 148  Q
    ||||||||  |||| | |||||| ||||||| ||||||||||| |||||||| |||||||||||  ||| ||||||||||||| || | ||| |||||||    
T  1326371 tttccttctctattctttccaaattacctctcaaatctctcaaacgatttacgtgtgcatgcaaaccatagtctcttttatttcaaaacccttatttcat 1326470  T
Q  149 gaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatggcacatgtcttttcctaaatataaaggagatactgcca 236  Q
    |   |||||||||| ||||||||||| ||||||| | ||| ||||||||| ||||| ||| ||||| ||||||||||||||| |||||    
T  1326471 gcctatgtttcgcaccaatttcatatctatgcattgttcactgtacaatgacacatatctcttccttaatataaaggagatattgcca 1326558  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 4875996 - 4876150
Alignment:
Q  82 aatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttcatatttatgca 181  Q
    ||||||||||  ||||||| ||||| | ||| |||| ||||||||||||| || | ||| |||||||||| ||||| |||| ||||||||||| ||||||    
T  4875996 aatctctcaattgatttacatgtgcctccaaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcaccaatttcatatctatgca 4876095  T
Q  182 tcgatcattgtacaatggcacatgtcttttcctaaatataaaggagatactgcca 236  Q
    ||||||||||||| ||  ||| | ||| || |||||||| ||||||||| |||||    
T  4876096 tcgatcattgtacgatcacacttatctctttctaaatattaaggagatattgcca 4876150  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 275
Target Start/End: Original strand, 44185487 - 44185620
Alignment:
Q  142 atttcatgaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatggcacatgtcttttcctaaatataaaggagatactgccatatga 241  Q
    |||||||| || |||| | || ||||||||||| ||||||||| ||||||||||||  ||| | ||| ||||||||||| |||||||||  |||| ||      
T  44185487 atttcatgcaattgttccacaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcgccacatcc 44185586  T
Q  242 tcaacatggttccactttgtatttcctctctgct 275  Q
    || | | ||||||| | ||||||| |||||||||    
T  44185587 tcgagacggttccaatctgtatttgctctctgct 44185620  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 20425791 - 20425827
Alignment:
Q  115 catggtctcttttatttgaagatcctcatttcatgaa 151  Q
    ||||||||||||||||||||||  |||||||||||||    
T  20425791 catggtctcttttatttgaagactctcatttcatgaa 20425827  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 275
Target Start/End: Original strand, 5387572 - 5387781
Alignment:
Q  66 tccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaaca 165  Q
    |||||| |||| || ||||||||||| |||||||| ||||| | ||| || ||||||||||||||| || | ||| |||||||| || |||| |||| ||    
T  5387572 tccaaattacccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttcatgcaattgttccgcacca 5387671  T
Q  166 atttcatatttatgcatcgatcattgtacaatggcacatgtcttttcctaaatataaaggagatactgccatatgatcaacatggttccactttgtattt 265  Q
    ||||||||||||||||||| ||||||||  ||  ||| | |||  ||||| |||||||||||||| ||||| ||  |||| ||||||||| | |||||||    
T  5387672 atttcatatttatgcatcgctcattgtatgatcacacctttctcatcctatatataaaggagatattgccacatcctcaagatggttccaatctgtattt 5387771  T
Q  266 cctctctgct 275  Q
     |||||||||    
T  5387772 gctctctgct 5387781  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 32745768 - 32745707
Alignment:
Q  109 gcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttc 170  Q
    |||| ||||||||||| |||| |||| || ||||||||||||| ||||||||||||||||||    
T  32745768 gcaaatcatggtctctcttatctgaaaatactcatttcatgaacatgtttcgcaacaatttc 32745707  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 29123296 - 29123357
Alignment:
Q  109 gcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttc 170  Q
    |||| ||||||||||| || | ||||||| ||||||||||||| ||||| ||||||||||||    
T  29123296 gcaaatcatggtctctcttgtctgaagatactcatttcatgaacatgttccgcaacaatttc 29123357  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 29136445 - 29136506
Alignment:
Q  108 tgcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaattt 169  Q
    ||||| ||||||||||| ||||||||| || ||| ||||||||| ||||| |||||||||||    
T  29136445 tgcaaatcatggtctctcttatttgaaaatactcgtttcatgaacatgttccgcaacaattt 29136506  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 29144444 - 29144497
Alignment:
Q  117 tggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttc 170  Q
    |||| ||| |||||||||||| ||||||||||||| ||||| ||||||||||||    
T  29144444 tggtatctcttatttgaagatactcatttcatgaacatgttccgcaacaatttc 29144497  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 29012044 - 29012108
Alignment:
Q  109 gcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttcata 173  Q
    |||| ||||||||||| || |||||| || ||||||||||||| |||||||||||  ||||||||    
T  29012044 gcaaatcatggtctctcttgtttgaaaatactcatttcatgaacatgtttcgcaatgatttcata 29012108  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 34259160 - 34259100
Alignment:
Q  114 tcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttcatat 174  Q
    ||||||||||| |||||  ||||  ||| ||||||||| ||||| ||||||||||||||||    
T  34259160 tcatggtctctcttattacaagacactcgtttcatgaacatgttccgcaacaatttcatat 34259100  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 9585 - 9695
Alignment:
Q  64 tctccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaa 163  Q
    |||||||| | |||||||||||| | || ||||||| ||||| |   || ||||||||||  ||||||||| | ||| |||||||||| |||| ||| ||    
T  9585 tctccaaattgcctcttaaatctttgaaacgatttagttgtgtacataaatcatggtctcgcttatttgaaaaccctaatttcatgaacatgtatcgtaa 9684  T
Q  164 caatttcatat 174  Q
    |||| ||||||    
T  9685 caatgtcatat 9695  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 19226308 - 19226210
Alignment:
Q  60 attttctccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgttt 158  Q
    ||||| || ||||||||| | |||||| | || ||||||||||||| |||||| || ||| ||||||| |||||| |  || |||||||||| ||||||    
T  19226308 attttgtcaaaactacctttgaaatctgtaaatcgatttacttgtgtatgcaaatcgtggactcttttgtttgaaaactcttatttcatgaacatgttt 19226210  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 51869173 - 51869222
Alignment:
Q  102 tgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcatgaa 151  Q
    ||||||| |||  |||||||||| ||||||||||| ||||||||||||||    
T  51869173 tgtgcatacaaaccatggtctctcttatttgaagaccctcatttcatgaa 51869222  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 9763499 - 9763615
Alignment:
Q  59 tattttctccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgttt 158  Q
    |||| |||| ||||| ||| |||||||| | ||||  ||| ||||||   |||| |||||||||||||| |||||| | |||  ||| ||||| ||||||    
T  9763499 tattctctctaaacttcctgttaaatctgttaagcatttttcttgtgttcgcaaatcatggtctcttttgtttgaaaaccctatttttatgaacatgttt 9763598  T
Q  159 cgcaacaatttcatatt 175  Q
    |||| |||| |||||||    
T  9763599 cgcaccaatctcatatt 9763615  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 7429885 - 7429837
Alignment:
Q  126 ttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttcatat 174  Q
    |||||| |||| |||||||||||||| || | |||||||||||||||||    
T  7429885 ttatttcaagaccctcatttcatgaacatctatcgcaacaatttcatat 7429837  T

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