View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3413_low_18 (Length: 255)
Name: NF3413_low_18
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3413_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 34144446 - 34144682
Alignment:
| Q |
19 |
cctcctgcatcaagtgagccactgctgcatctacttctctttttcctctttcttttatcagaaaaatcaatcctttcacacatagactggtcatagatct |
118 |
Q |
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| T |
34144446 |
cctcctgcatcaagtgagccactgctgcatctacttctctttttcctctttcttttgtcagaaaaatcaatcctttcacacatagactggtcatagatct |
34144545 |
T |
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| Q |
119 |
tgacatcaaatttatacttgttaatgcagttgaatacaagcaaatctccaatttcaagcttgtgagccgatgagaaatcaccccatcctttcttaaaagc |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34144546 |
tgacatcaaagttatacttgttaatgcagttgaatacaagcaaatctccaatttcaagcttgtgagccgatgagaaatcatcccatcctttcttaaaagc |
34144645 |
T |
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| Q |
219 |
aaaagaaccatcaacttctgaaattgttataacccat |
255 |
Q |
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||||||||||||||||||||| | ||||||| ||||| |
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| T |
34144646 |
aaaagaaccatcaacttctgatactgttatagcccat |
34144682 |
T |
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