View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3413_low_25 (Length: 202)

Name: NF3413_low_25
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3413_low_25
NF3413_low_25
[»] chr3 (5 HSPs)
chr3 (1-190)||(8363389-8363581)
chr3 (1-64)||(14800415-14800478)
chr3 (116-198)||(26883003-26883085)
chr3 (1-93)||(17546542-17546634)
chr3 (1-93)||(26883102-26883194)
[»] chr7 (2 HSPs)
chr7 (1-91)||(21936284-21936374)
chr7 (1-81)||(9633778-9633858)
[»] chr8 (4 HSPs)
chr8 (1-91)||(22471896-22471986)
chr8 (1-90)||(22470436-22470525)
chr8 (1-87)||(28915194-28915280)
chr8 (1-33)||(8988934-8988966)
[»] chr2 (6 HSPs)
chr2 (1-91)||(18831168-18831258)
chr2 (4-93)||(27877785-27877874)
chr2 (116-195)||(27877689-27877768)
chr2 (1-53)||(18371206-18371258)
chr2 (123-198)||(16374487-16374562)
chr2 (116-195)||(25897095-25897174)
[»] chr1 (2 HSPs)
chr1 (15-93)||(42378575-42378653)
chr1 (1-50)||(18896112-18896161)
[»] chr4 (1 HSPs)
chr4 (1-81)||(13603388-13603468)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-66)||(9152-9217)
[»] chr6 (3 HSPs)
chr6 (1-62)||(22885639-22885700)
chr6 (1-66)||(22903593-22903658)
chr6 (1-66)||(22918437-22918502)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 7e-51; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 8363581 - 8363389
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaatattttacgc---n 97  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        
T  8363581 agactctagaatgttattggcaattgattcagttagttgaaaggtgtatgggtataactatatataggcaggagtgataagagcaatattttaagcaaaa 8363482  T
Q  98 nnnnnnnnnnnnnnnnnntgattcaattcagagaaagtgtgattcgattcaaacatgtctaaatggacagatctgtagctagtaaggttgata 190  Q
                      |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  8363481 aataataataaaacaatatgattcaattcagagaaagtgtgattcgattcaaacatgtataaatggacagatctgtagctatgaaggttgata 8363389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14800478 - 14800415
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatata 64  Q
    ||||||||||||  |||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  14800478 agactctagaataatatttgcaattgattcagttggttggaaggtgtatgggtatatctatata 14800415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 26883085 - 26883003
Alignment:
Q  116 tgattcaattcagagaaagtgtgattcgattcaaacatgtctaaatggacagatctgtagctagtaaggttgatatgattcaa 198  Q
    |||||| ||||| | ||||||||||| ||||||||||||| ||||||| ||||| || |||||  |||||||||| |||||||    
T  26883085 tgattcgattcatataaagtgtgatttgattcaaacatgtataaatgggcagatttggagctatgaaggttgatacgattcaa 26883003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 17546634 - 17546542
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaatatttta 93  Q
    |||||||||||||||| | |||||||||| |||   |||||||  |||||| |||| ||||||||||||||| || ||||| |||| ||||||    
T  17546634 agactctagaatgttacttgcaattgatttagtagtttggaagtggtatggttatagctatatataggcaggggtcataagtgcaacatttta 17546542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 26883194 - 26883102
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaatatttta 93  Q
    ||||||||| |||||||| |||||||||||||||  |||||||  |||||  |||||||||||||| ||||| || | ||| |||| ||||||    
T  26883194 agactctagtatgttatttgcaattgattcagttgtttggaagtggtatgaatataactatatatatgcaggggtaacaagtgcaacatttta 26883102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 21936284 - 21936374
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaatattt 91  Q
    |||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| || |||||||| |||||||||||  |||||||||    
T  21936284 agactctagaatgttatttgcaattgattcagtaagttggaagttgtatgggtatatctgtatataggaaggagtgataactgcaatattt 21936374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 9633858 - 9633778
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataag 81  Q
    |||||||||| || |||| |||||||||||| | |||||||||||||||| |||||||||||||||  || ||||||||||    
T  9633858 agactctagattgatatttgcaattgattcattgagttggaaggtgtatgtgtataactatatatatacatgagtgataag 9633778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 8e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 22471896 - 22471986
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaatattt 91  Q
    |||||||||||||||||| |  |||||||  || |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  22471896 agactctagaatgttatttgtcattgatttggtaagttggaaggtgtatgggtatagctacatataggcaggagtgataagtgcaatattt 22471986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 22470436 - 22470525
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaatatt 90  Q
    |||||| ||||||||||| |||||  ||||||  |||||||||||||||||||||| ||||||| || || |||||||||| ||||||||    
T  22470436 agactcaagaatgttattagcaatatattcaggaagttggaaggtgtatgggtatagctatatacagacatgagtgataagtgcaatatt 22470525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 28915194 - 28915280
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaat 87  Q
    |||||||| ||||||||| ||||||||||   | |||||||| ||||||||||||| |||||||||| || |||||| ||| |||||    
T  28915194 agactctaaaatgttatttgcaattgattttatgagttggaaagtgtatgggtatagctatatatagacatgagtgacaagtgcaat 28915280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8988966 - 8988934
Alignment:
Q  1 agactctagaatgttattggcaattgattcagt 33  Q
    |||||||||||||||||| ||||||||||||||    
T  8988966 agactctagaatgttatttgcaattgattcagt 8988934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 8e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 18831168 - 18831258
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaatattt 91  Q
    ||||||||||| |||||| |||  ||||||||| ||||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||    
T  18831168 agactctagaaagttatttgcatctgattcagtgagttggaaggtgtataggtatagctacatataggcaggagtgataagtgcaatattt 18831258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 27877874 - 27877785
Alignment:
Q  4 ctctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaatatttta 93  Q
    ||||||||||| ||| ||||||| |||||| |||||||| |||||||||||||  |||||||| |||| ||||||||| ||| |||||||    
T  27877874 ctctagaatgtcatttgcaattgcttcagtaagttggaaagtgtatgggtatagttatatataagcagaagtgataagtgcagtatttta 27877785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 27877768 - 27877689
Alignment:
Q  116 tgattcaattcagagaaagtgtgattcgattcaaacatgtctaaatggacagatctgtagctagtaaggttgatatgatt 195  Q
    |||||| ||||| |||||||||||||||||||| |||||| |||||||| | ||||| |||||  |||||||||| ||||    
T  27877768 tgattcgattcaaagaaagtgtgattcgattcagacatgtgtaaatggataaatctggagctatgaaggttgatacgatt 27877689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18371258 - 18371206
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggt 53  Q
    ||||||||||||| |||| |||||||||| ||| |||| ||||||||||||||    
T  18371258 agactctagaatgatatttgcaattgatttagtgagtttgaaggtgtatgggt 18371206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 16374487 - 16374562
Alignment:
Q  123 attcagagaaagtgtgattcgattcaaacatgtctaaatggacagatctgtagctagtaaggttgatatgattcaa 198  Q
    |||||||| |||| |||||| |||||||||||| |||||||||| || || |||||  |||||| ||| |||||||    
T  16374487 attcagagtaagtatgattcaattcaaacatgtgtaaatggacaaatttggagctatgaaggtttatacgattcaa 16374562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 25897174 - 25897095
Alignment:
Q  116 tgattcaattcagagaaagtgtgattcgattcaaacatgtctaaatggacagatctgtagctagtaaggttgatatgatt 195  Q
    |||||||| ||||| ||||||| ||||||||||||||||| ||||| | || ||||| | | |  |||||||||||||||    
T  25897174 tgattcaaatcagataaagtgtaattcgattcaaacatgtgtaaattggcaaatctgaaacaatgaaggttgatatgatt 25897095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 42378653 - 42378575
Alignment:
Q  15 tattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataagagcaatatttta 93  Q
    |||| |||||||||||||| ||||||||||||||||||||||  |||||| ||||||||||||||||  ||||||||||    
T  42378653 tatttgcaattgattcagtgagttggaaggtgtatgggtatagttatatacaggcaggagtgataagttcaatatttta 42378575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18896112 - 18896161
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatg 50  Q
    |||||||| |||| |||| |||||||||||||| ||||||||| ||||||    
T  18896112 agactctaaaatgatatttgcaattgattcagtaagttggaagttgtatg 18896161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 13603388 - 13603468
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatataggcaggagtgataag 81  Q
    |||||||||| || |||| |||||||||||| | |||||||||||||||| |||||||||||||||  || ||||||||||    
T  13603388 agactctagattgatatttgcaattgattcattgagttggaaggtgtatgtgtataactatatatatacatgagtgataag 13603468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9217 - 9152
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatata 66  Q
    |||||||||||| ||||| |||||||||| | | |||||||||||||||  |||||||||||||||    
T  9217 agactctagaatattatttgcaattgattaaataagttggaaggtgtattagtataactatatata 9152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22885700 - 22885639
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactata 62  Q
    |||||||||||| ||||| |||||||||| | | |||||||||||||||| |||||||||||    
T  22885700 agactctagaatattatttgcaattgattaaataagttggaaggtgtatgagtataactata 22885639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22903658 - 22903593
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatata 66  Q
    |||||||||||| ||||| |||||||||| | | |||||||||||||||  |||||||||||||||    
T  22903658 agactctagaatattatttgcaattgattaaataagttggaaggtgtattagtataactatatata 22903593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22918502 - 22918437
Alignment:
Q  1 agactctagaatgttattggcaattgattcagttagttggaaggtgtatgggtataactatatata 66  Q
    |||||||||||| ||||| |||||||||| | | |||||||||||||| | |||||| ||||||||    
T  22918502 agactctagaatattatttgcaattgattaaatgagttggaaggtgtacgagtataaatatatata 22918437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University