View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3413_low_3 (Length: 449)
Name: NF3413_low_3
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3413_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 240 - 435
Target Start/End: Original strand, 43200208 - 43200403
Alignment:
| Q |
240 |
gacatgcatcagggtgataacaacaaacaaaatccagcatcaatactctcattttctgtacttaattcatccttaattgattgatgacaaatggaataat |
339 |
Q |
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| T |
43200208 |
gacatgcatcagggtgataacaacaaacaaaatccagcatcaatactctcattttctgtacttaattcatccttaattgattgatgacaaatggaataat |
43200307 |
T |
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| Q |
340 |
tataataatttatagtgagcagtaaaaattaaccaaaataggaaatattatcatcacttgaaattgtattatagttgggatccctctgttgaaagt |
435 |
Q |
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| T |
43200308 |
aataataatttatagtgagcagtaaaaattaaccaaaataggaaatattatcatcacttgaaattgtattatagttgggatccctctgttgaaagt |
43200403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 43199966 - 43200152
Alignment:
| Q |
1 |
tgctcaattaattctaacaaccaatattgccattaattctatccttcttcctttgcaatcataatttcccaaaccaaaaaatttgatacagaactagcaa |
100 |
Q |
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| T |
43199966 |
tgctcaattaattctaacaaccaatattgccattaattctatccttcttcctttgcaatcataatttcccaaaccaaaaaatttgatacagaacaagcaa |
43200065 |
T |
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| Q |
101 |
gtttttgatgtagattaataaagttaatcacaggatcaatgagctagaaattaacgtttaactaattatataattctacataggcat |
187 |
Q |
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| T |
43200066 |
gtttttgaagtagattaataaagttaatcacaggatcaatgagctagaaattaacgtttaactaattatataattccacataggcat |
43200152 |
T |
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