View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3413_low_5 (Length: 421)
Name: NF3413_low_5
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3413_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 25909181 - 25908796
Alignment:
| Q |
19 |
aacaggtcctcaaccaaaactcaactgtaaaaatcaaaattgtaaccagccaaaagtagccggtagtaacttatctaggccactgacttttttaataata |
118 |
Q |
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| T |
25909181 |
aacagatcctcaaccaaaactcaactgtaaaaatcaaaattgtaaccagccaaaagtagccggtagtaactcatctaggccactgacttttttaataata |
25909082 |
T |
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| Q |
119 |
aatctaatggttaaacatgctataatttgcttaccattgaatggctattgttcattaaacttctgcaataagttcaaactttcctccatttctcacattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25909081 |
aatctaatggttaaacatgctataatttgcttaccattgaatggctattgttcattaaacttctgcaataagttcaaactttcctccatttctcacattt |
25908982 |
T |
|
| Q |
219 |
tttgctgtgattaaacgtcatatgtgtgtattgtgtatcctatgcttgcatcagtgcatggattgtaacaacctcaaagccaactcttcttgatcttccg |
318 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25908981 |
tttgctgtgattaaacgtcata----tgtattgtgtatcctatgcttgcatcagtgcatggattgtaacaacctcaaagccaactcttcttgatcttccg |
25908886 |
T |
|
| Q |
319 |
tttgtttccttgaagcttcttttctttcaccctcatcactgtcactatcaaagtatattttactctttttatgacgtctatttaccgttt |
408 |
Q |
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| T |
25908885 |
tttgtttccttgaagcttcttttctttcaccctcatcattgtcactatcaaagtatattttactctttttatgacgtctatttaccgttt |
25908796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 40421838 - 40422223
Alignment:
| Q |
19 |
aacaggtcctcaaccaaaactcaa---ctgtaaaaatcaaaattgtaaccagccaaaagtagccggtagtaacttatctaggccactgacttttttaata |
115 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||| || ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
40421838 |
aacaggtcctcaaccaaaactcaaaaactgtaaaaatcaaaattgcaaccagccccaaatagccggtagtaactaatctagaccactgacttttttaata |
40421937 |
T |
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| Q |
116 |
ataaatctaatggttaaacatgctataatttgcttaccattgaatggctattgttcattaaacttctgcaataagttcaaactttcctccatttctcaca |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
40421938 |
ataaatctaatggttaaacataatataatttgcttaccattgaatggctattgttcattgaacttctgcaataagttcaaacttccctccatttctcaca |
40422037 |
T |
|
| Q |
216 |
ttttttgctgtgattaaacgtcatatgtgtgtattgtgtatcctatgcttgcatcagtgcatggattgtaacaacctcaaagccaactcttcttgatctt |
315 |
Q |
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| T |
40422038 |
ttttt-gcagtgattaaacgtcatatatgtgtattatgtatcctatgcttgcatcagtgcatggattgtaacaacttcaaagccaactcttcttgatctt |
40422136 |
T |
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| Q |
316 |
ccgtttgtttccttgaagcttcttttctttcaccctcatcactgtcactatcaaagtatattttactctttttatgacgtctattta |
402 |
Q |
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|||||||| | ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40422137 |
ccgtttgtcttcttgaagcttcttttctttgaccctcatcactgtcactgtcaaagtatattttactctttttatgacgtctattta |
40422223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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