View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3413_low_8 (Length: 374)
Name: NF3413_low_8
Description: NF3413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3413_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 351
Target Start/End: Complemental strand, 28916729 - 28916390
Alignment:
| Q |
12 |
acagagttcaaggttaacctatttgaaatttttgtttaaaattaaatgaatccttagtttttataatctgannnnnnnnaataaatatattttttagggt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28916729 |
acagagttcaaggttaacctatttgaaatttttgtttaaaattaaatgaatccttagtttttataatctgattttttttaataaatatattttttagggt |
28916630 |
T |
|
| Q |
112 |
gtgcttcgtaatggtgtcgtggttgttgtcaagaaaatggtcggatcttgaatgagtgctaacatacaattcaccgcagagataacgaccattggaaatc |
211 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28916629 |
gttcttcgtaatggtgtcgtggttgttgtcaagaaaatgatcggatctcgcatgagcgctaacatacaattcaccgcagagataacgaccattggaaatc |
28916530 |
T |
|
| Q |
212 |
tccagcaccggaatcttgtaaaatcaataggctttgcggttaatgagaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtat |
311 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28916529 |
tccagcaccggaatcttgtaaaatcaacaggctttgcggttaatgagaaaattttctcagtatgttgaagactaagtgggtcataacacatacatggtat |
28916430 |
T |
|
| Q |
312 |
ttgttcaaaatcttcttccattagaatctggcttatatat |
351 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28916429 |
ttgttcaaaatcttctaacattagaatctggcttatatat |
28916390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 35022000 - 35022048
Alignment:
| Q |
32 |
atttgaaatttttgtttaaaattaaatgaatccttagtttttataatct |
80 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
35022000 |
atttgaaatttttgtttaaaatttaatgaattcttattttttataatct |
35022048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 41596890 - 41596796
Alignment:
| Q |
257 |
agaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtatttgttcaaaatcttcttccattagaatctggcttatatat |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
41596890 |
agaaaattttctcagtatgttgaagactaagtgggtcataacacatacatggtttttgttcaaattcttcttccattaaaatctggcttatatat |
41596796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 27326153 - 27326063
Alignment:
| Q |
257 |
agaaaattttctcagtatgttgaagactaagtgtgtcataacacatacatggtatttgttcaaaatcttcttccattagaatctggcttatatat |
351 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||||||||||||| |||||| | ||| |||||||||||| |
|
|
| T |
27326153 |
agaaaattttctcagta----gaagactaagcgggtcataacacatacatggtttttgttcaaaatctttttccatcaaaatatggcttatatat |
27326063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University