View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3414_high_1 (Length: 863)

Name: NF3414_high_1
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3414_high_1
NF3414_high_1
[»] chr3 (10 HSPs)
chr3 (19-458)||(52624374-52624800)
chr3 (456-655)||(52616572-52616760)
chr3 (507-654)||(52624144-52624291)
chr3 (646-792)||(52623897-52624043)
chr3 (318-458)||(52616808-52616948)
chr3 (730-854)||(52602788-52602912)
chr3 (743-854)||(52623786-52623897)
chr3 (771-811)||(14078089-14078129)
chr3 (294-326)||(52617006-52617038)
chr3 (456-485)||(52624297-52624326)
[»] chr7 (2 HSPs)
chr7 (754-811)||(19414012-19414069)
chr7 (771-811)||(28623136-28623176)
[»] chr6 (1 HSPs)
chr6 (754-809)||(27167426-27167481)
[»] scaffold0300 (1 HSPs)
scaffold0300 (754-812)||(11415-11473)
[»] scaffold0273 (1 HSPs)
scaffold0273 (771-811)||(22363-22403)
[»] scaffold0032 (1 HSPs)
scaffold0032 (754-812)||(78704-78762)
[»] chr5 (1 HSPs)
chr5 (773-815)||(24163029-24163071)
[»] chr1 (2 HSPs)
chr1 (773-811)||(20908543-20908581)
chr1 (757-802)||(19474953-19474998)
[»] scaffold0578 (1 HSPs)
scaffold0578 (757-802)||(5807-5852)


Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Complemental strand, 52624800 - 52624374
Alignment:
Q  19 gctgagacactggagcacctgactaatcagaaccgtcagatcctgggattctgtcatgattcgaagataggggttaaacagtacctaccccattacacaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52624800 gctgagacactggagcacctgactaatcagaaccgtcagatcctgggattctgtcatgattcgaagataggggttaaacagtacctaccccattacacaa 52624701  T
Q  119 caatgcaggagtggatggaccactttggagataaatggacccaattcaatgccatgaagatgcaattcgaccctcaacgaatcttagcaacaggccagcg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52624700 caatgcaggagtggatggaccactttggagataaatggacccaattcaatgccatgaagatgcaattcgaccctcaacgaatcttagcaacaggccagcg 52624601  T
Q  219 aatatttcattttgaaccttccaatgtcattactaaggatgacatgtaatgcagcaaacgaaataaactcagaatgaatgatacaagtgtaaaaatgata 318  Q
    ||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  52624600 aatatttcattttgaa---------gtcattactaaggatgacatgtaatgcagcaaacgaaataaactca----gaatgatacaagtgtaaaaatgata 52624514  T
Q  319 aataattaaagaattagaaacaggtgnnnnnnnccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgttg 418  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52624513 aataattaaagaattagaaacaggtgtttttttccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgttg 52624414  T
Q  419 ctatctgaagattattgattgaaatggagttggattattg 458  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  52624413 ctatctgaagattattgattgaaatggagttgggttattg 52624374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 456 - 655
Target Start/End: Complemental strand, 52616760 - 52616572
Alignment:
Q  456 ttgatctaagagacgtggggcctttttggggggaaggggagatgacaatacacatgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgat 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  52616760 ttgatctaagagacgtggggcctttttggggggaaggggagatgaca-------tgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgat 52616668  T
Q  556 tttgttgtcttatccacatacaagcatctgtttgtttccagtgtccatttctttggaagtttgccatctttcctgtttacaattttaatcctataaattg 655  Q
    |||||||||||||||||||||||||| |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52616667 tttgttgtcttatccacatacaagcagc----tgtttccagtgtccatttctttggaagtttgccatctttcctgtttacaattttaatcctttaaattg 52616572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 507 - 654
Target Start/End: Complemental strand, 52624291 - 52624144
Alignment:
Q  507 acatgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgattttgttgtcttatccacatacaagcatctgtttgtttccagtgtccatttc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52624291 acatgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgattttgttgtcttatccacatacaagcagctgtttgtttccagtgtccatttc 52624192  T
Q  607 tttggaagtttgccatctttcctgtttacaattttaatcctataaatt 654  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52624191 tttggaagtttgccatctttcctgtttacaattttaatcctttaaatt 52624144  T

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Target: chr3; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 646 - 792
Target Start/End: Complemental strand, 52624043 - 52623897
Alignment:
Q  646 ctataaattgtttgagtttttcttcgatttctttttcaaagtgttaagatcaatctagacaaaatctgatgttgcagtttgaatgcagcagcaatacaaa 745  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52624043 ctataaattgtttgagtttttcttcgatttctttttcaaagtgttaagatcaatctagacaaaatctgatgttgcagtttgaatgcatcagcaatacaaa 52623944  T
Q  746 agacatgaataaaagataaagaattagagagagaagaaagacacaaa 792  Q
    |||| | ||||||||||||||||||||||| ||||||||||||||||    
T  52623943 agacgtaaataaaagataaagaattagagaaagaagaaagacacaaa 52623897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 318 - 458
Target Start/End: Complemental strand, 52616948 - 52616808
Alignment:
Q  318 aaataattaaagaattagaaacaggtgnnnnnnnccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgtt 417  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52616948 aaataattaaagaattagaaacaggtgtttttttccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgtt 52616849  T
Q  418 gctatctgaagattattgattgaaatggagttggattattg 458  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  52616848 gctatctgaagattattgattgaaatggagttgggttattg 52616808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 730 - 854
Target Start/End: Complemental strand, 52602912 - 52602788
Alignment:
Q  730 gcagcagcaatacaaaagacatgaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttataaataagagttgt 829  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  52602912 gcagcagcaatacaaaagacgtaaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttacaaataagagtagt 52602813  T
Q  830 acagtccctacgccaaaatgatgat 854  Q
     || |||| ||  ||||||||||||    
T  52602812 ccaatccccacatcaaaatgatgat 52602788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 743 - 854
Target Start/End: Complemental strand, 52623897 - 52623786
Alignment:
Q  743 aaaagacatgaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttataaataagagttgtacagtccctacgc 842  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || || |||| ||      
T  52623897 aaaagacgtaaataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctcttacaaataagagtagttcattccccactt 52623798  T
Q  843 caaaatgatgat 854  Q
    ||||||||||||    
T  52623797 caaaatgatgat 52623786  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 771 - 811
Target Start/End: Complemental strand, 14078129 - 14078089
Alignment:
Q  771 agagagagaagaaagacacaaagtaatttatattggttcct 811  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  14078129 agagagagaagaaagacacaaagcaatttatagtggttcct 14078089  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 52617038 - 52617006
Alignment:
Q  294 gaatgatacaagtgtaaaaatgataaataatta 326  Q
    |||||||||||||||||||||||||||||||||    
T  52617038 gaatgatacaagtgtaaaaatgataaataatta 52617006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 485
Target Start/End: Complemental strand, 52624326 - 52624297
Alignment:
Q  456 ttgatctaagagacgtggggcctttttggg 485  Q
    ||||||||||||||||||||||||||||||    
T  52624326 ttgatctaagagacgtggggcctttttggg 52624297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 754 - 811
Target Start/End: Original strand, 19414012 - 19414069
Alignment:
Q  754 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcct 811  Q
    |||||||||||||| | ||||||||||||||||||||||  |||||||| ||||||||    
T  19414012 ataaaagataaagagtcagagagagaagaaagacacaaaacaatttatactggttcct 19414069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 771 - 811
Target Start/End: Complemental strand, 28623176 - 28623136
Alignment:
Q  771 agagagagaagaaagacacaaagtaatttatattggttcct 811  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  28623176 agagagagaagaaagacacaaagcaatttatataggttcct 28623136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 754 - 809
Target Start/End: Complemental strand, 27167481 - 27167426
Alignment:
Q  754 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttc 809  Q
    ||||| |||||||| | |||||||||||| |||||||||| |||||||||||||||    
T  27167481 ataaacgataaagagtcagagagagaagacagacacaaagcaatttatattggttc 27167426  T

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Target: scaffold0300 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 754 - 812
Target Start/End: Original strand, 11415 - 11473
Alignment:
Q  754 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctc 812  Q
    |||||||||||||| | ||||||||||||||||||| ||  |||||||| |||||||||    
T  11415 ataaaagataaagagtcagagagagaagaaagacactaaacaatttataatggttcctc 11473  T

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Target: scaffold0273 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 771 - 811
Target Start/End: Original strand, 22363 - 22403
Alignment:
Q  771 agagagagaagaaagacacaaagtaatttatattggttcct 811  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  22363 agagaaagaagaaagacacaaagtaatttatagtggttcct 22403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 754 - 812
Target Start/End: Original strand, 78704 - 78762
Alignment:
Q  754 ataaaagataaagaattagagagagaagaaagacacaaagtaatttatattggttcctc 812  Q
    |||||||||||||| |||| ||||||| |||||| ||||| |||||||| | |||||||    
T  78704 ataaaagataaagagttagggagagaacaaagacgcaaagcaatttataatagttcctc 78762  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 773 - 815
Target Start/End: Original strand, 24163029 - 24163071
Alignment:
Q  773 agagagaagaaagacacaaagtaatttatattggttcctctta 815  Q
    ||||||||||||||||||||  ||||| |||||||||||||||    
T  24163029 agagagaagaaagacacaaaacaatttgtattggttcctctta 24163071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 773 - 811
Target Start/End: Original strand, 20908543 - 20908581
Alignment:
Q  773 agagagaagaaagacacaaagtaatttatattggttcct 811  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  20908543 agagagaagacagacacaaagcaatttatattggttcct 20908581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 802
Target Start/End: Complemental strand, 19474998 - 19474953
Alignment:
Q  757 aaagataaagaattagagagagaagaaagacacaaagtaatttata 802  Q
    ||||||||||| | ||||||||||||||||||||||  ||||||||    
T  19474998 aaagataaagagtcagagagagaagaaagacacaaatcaatttata 19474953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 802
Target Start/End: Complemental strand, 5852 - 5807
Alignment:
Q  757 aaagataaagaattagagagagaagaaagacacaaagtaatttata 802  Q
    ||||||||||| | ||||||||||||||||||||||  ||||||||    
T  5852 aaagataaagagtcagagagagaagaaagacacaaatcaatttata 5807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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