View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3414_high_12 (Length: 255)
Name: NF3414_high_12
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 45650655 - 45650831
Alignment:
| Q |
1 |
ccgagactgtcaccaactgcaaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacagttg |
100 |
Q |
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| T |
45650655 |
ccgagactgtcaccaactgcaaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacagttg |
45650754 |
T |
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| Q |
101 |
caagagttggcactgccacattgatcactaaaaagaaacctaaaatcaaaggattagagaatgtcatcttaagagat |
177 |
Q |
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| T |
45650755 |
caagagttggcactgccacattgatcactaaaaagaagcctaaaatcaaaggattagagaatgtcatcttaagagat |
45650831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 45643342 - 45643502
Alignment:
| Q |
1 |
ccgagactgtcaccaactgcaaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacagttg |
100 |
Q |
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| T |
45643342 |
ccgagactgtcaccaactgcaaaggttttgtcactagtccatgtgttataatcaggaccaactgtccaacctaaaccatctccaacaatgtggtttgttg |
45643441 |
T |
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| Q |
101 |
caagagttggcactgccacattgatcactaaaaagaaacctaaaatcaaaggattagagaa |
161 |
Q |
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| T |
45643442 |
ccagagtcggcaatggcatagtgatagctaaaaagaagcataaaaccaaagcattagagaa |
45643502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 45702988 - 45702807
Alignment:
| Q |
1 |
ccgagactgtcaccaactgcaaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacagttg |
100 |
Q |
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| T |
45702988 |
ccgagactgtcaccaactacaaaggttttgtcactagcccatgttgtataatcagaatcaactgtccaacctaaaccatctccaacaatgtggtttgttg |
45702889 |
T |
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| Q |
101 |
caagagttggcactgccacattgatcactaaaaagaaacctaaaatcaaaggattagagaatgtcatcttaagagatagtga |
182 |
Q |
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| T |
45702888 |
ccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaatagattgtga |
45702807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 45886800 - 45886619
Alignment:
| Q |
1 |
ccgagactgtcaccaactgcaaatgttttgtcactagcccatgtgttataatcagaaccaattgcccaacctgatttatcaccaacggtgtggacagttg |
100 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||| || ||||||| | ||| ||||| ||||| |||| |
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| T |
45886800 |
ccgagactgtcaccaactacaaaggttttgtcactagcccatgttgtataatcagaatcaactgtccaacctaaaccatctccaacaatgtggtttgttg |
45886701 |
T |
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| Q |
101 |
caagagttggcactgccacattgatcactaaaaagaaacctaaaatcaaaggattagagaatgtcatcttaagagatagtga |
182 |
Q |
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| T |
45886700 |
ccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaatagattgtga |
45886619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 45650828 - 45650871
Alignment:
| Q |
200 |
agatggctatgttttttctaaaggaatgaggctatgaggatatt |
243 |
Q |
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| T |
45650828 |
agatggctatgttttttctaaaggaaggaggctatgaggatatt |
45650871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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