View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3414_high_14 (Length: 249)
Name: NF3414_high_14
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_high_14 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 45650450 - 45650669
Alignment:
| Q |
18 |
atagtcactttctttaacttcatccactgtgtgcccagctccatagttgaatactgtcatagtaaagttacatatatacattagttttggaaattgtgtt |
117 |
Q |
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| T |
45650450 |
atagtcactttctttaacttcatccactgtgtgcccagctccatagttgaatactgtcatagtaaagttacata----cattagttttggaaatt----- |
45650540 |
T |
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| Q |
118 |
tacaatataaaactaaaattgacaaaacttcaattaactatttttcagtttacaatattaa---aagctttcttcccattattgaattgtgtctaacaaa |
214 |
Q |
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| T |
45650541 |
------ataaaactaaaattgacaaaacttcaattaactatttttcagtttacaatattattataagctttcttcccattattgaattgtgtctaacaaa |
45650634 |
T |
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| Q |
215 |
gaaagaataaataatatttaccgagactgtcacca |
249 |
Q |
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| T |
45650635 |
gaaagaataaataatatttaccgagactgtcacca |
45650669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 45643186 - 45643255
Alignment:
| Q |
18 |
atagtcactttctttaacttcatccactgtgtgcccagctccatagttgaatactgtcatagtaaagtta |
87 |
Q |
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| T |
45643186 |
atagtcactttctttaacttcatccactgtgtgcccagctacatagttgaacactgtcataataaagtta |
45643255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 45886950 - 45886883
Alignment:
| Q |
18 |
atagtcactttctttaacttcatccactgtgtg---cccagctccatagttgaatactgtcatagtaa |
82 |
Q |
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| T |
45886950 |
atagtcactttcattaacttcatccactgtgtgccacccagcttcatagttgaacactgtcatagtaa |
45886883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 45703138 - 45703075
Alignment:
| Q |
18 |
atagtcactttctttaacttcatccactgtgtg---cccagctccatagttgaatactgtcata |
78 |
Q |
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| T |
45703138 |
atagtcactttccctaacttcatccactgtgtgccacccagcttcatagttgaacactgtcata |
45703075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 30054809 - 30054921
Alignment:
| Q |
18 |
atagtcactttctttaacttcatccactgtgtgcccagctccatagttgaatactgtcatagtaaagttacatatatacattagttttggaaattgtgtt |
117 |
Q |
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| T |
30054809 |
atagtcactttctttaacttaatccactgtgtgcccgattccatagttgaacattgtcatagtaaagttac----atacattagttttgtaaattatggt |
30054904 |
T |
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| Q |
118 |
tacaatataaaactaaa |
134 |
Q |
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| T |
30054905 |
tgcaattgaaaactaaa |
30054921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 1192270 - 1192198
Alignment:
| Q |
18 |
atagtcactttctttaacttcatccactgtgtgcccagctccatagttgaatactgtcatagtaaagttacata |
91 |
Q |
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| T |
1192270 |
atagtcacttt-tttgacttaatccactgtgtgcccaactccatagttgaacacaatcaaagtaaagttacata |
1192198 |
T |
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