View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3414_high_16 (Length: 247)
Name: NF3414_high_16
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42512282 - 42512048
Alignment:
| Q |
1 |
tttcaatgcttgcagatatgctcagctaccataagctatgtcagcttgcaaatggagaatttaaacacttgttcctgtgagttgagttacagcaagctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42512282 |
tttcaatgcttgcagatatgctcagctaccataagctatgtcagcttgcaaatggagaatttaaacacttgttcctgtgagttgagttacagcaagctta |
42512183 |
T |
|
| Q |
101 |
tctgactatacaaagacatctctatcatatggaaaaactagaggagacattactgttgtgttggctaaaatgttcaatcgtttttgttcccacggtaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42512182 |
tctgactatacaaagacatctctatcatatggaaaaactggaggagacattactgttgtgttggctaaaatgttcaatcgtttttgttcccacggtaaat |
42512083 |
T |
|
| Q |
201 |
aatatctgcttgtgctataattgaaatctatagat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
42512082 |
aatatctgcttgtgctataattgaaatctatagat |
42512048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University