View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3414_high_6 (Length: 354)

Name: NF3414_high_6
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3414_high_6
NF3414_high_6
[»] chr5 (2 HSPs)
chr5 (111-310)||(30440958-30441166)
chr5 (19-107)||(30440514-30440602)
[»] chr1 (5 HSPs)
chr1 (167-220)||(16961515-16961568)
chr1 (167-220)||(25867475-25867528)
chr1 (19-62)||(16960962-16961005)
chr1 (19-62)||(25868904-25868947)
chr1 (65-106)||(26496286-26496327)
[»] chr6 (3 HSPs)
chr6 (167-220)||(4091541-4091594)
chr6 (19-62)||(4091927-4091970)
chr6 (19-62)||(4435706-4435749)
[»] chr4 (2 HSPs)
chr4 (167-220)||(47520945-47520998)
chr4 (19-62)||(47521189-47521232)
[»] chr3 (1 HSPs)
chr3 (19-62)||(46595089-46595132)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 111 - 310
Target Start/End: Complemental strand, 30441166 - 30440958
Alignment:
Q  111 gcaaagctgtaaacgtgcgtatattttccatgcacatttatatggttgtgcaactgtgtgt---ataaagcagttcccatgtaaagttaaaagtaacatt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  30441166 gcaaagctgtaaacgtgcgtatattttccatgcacatttatatggttgtgcaactgtgtgtataataaagcagttcccatgtaaagttaaaagtaacatt 30441067  T
Q  208 gtaaatgacaaatgttccaatgc------aaatnnnnnnncgctcaatgcctctcaacattgtaaatgacaaatatttcacacgctcaatgcctcttaac 301  Q
    |||||||||||||||||||||||      |||        |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30441066 gtaaatgacaaatgttccaatgcaaaaaaaaaaaaaaaaacgctcaatgcctcttaacattgtaaatgacaaatatttcacacgctcaatgcctcttaac 30440967  T
Q  302 aacaaaaaa 310  Q
    || ||||||    
T  30440966 aaaaaaaaa 30440958  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 30440602 - 30440514
Alignment:
Q  19 tttgttgttttattgaacaaacaatggtgtttttgagaataaaactgattacatctagtcttattctaggttttcactataacattggt 107  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  30440602 tttgttgttttattgaacaaacaatggtgttttttagaataaaacttattacatctggtctttttctaggttttcactataacattggt 30440514  T

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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 16961568 - 16961515
Alignment:
Q  167 tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16961568 tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 16961515  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 25867475 - 25867528
Alignment:
Q  167 tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 220  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25867475 tgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaat 25867528  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 16961005 - 16960962
Alignment:
Q  19 tttgttgttttattgaacaaacaatggtgtttttgagaataaaa 62  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  16961005 tttgttgttatattgaacaaacaatggtatttttgagaataaaa 16960962  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 25868904 - 25868947
Alignment:
Q  19 tttgttgttttattgaacaaacaatggtgtttttgagaataaaa 62  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  25868904 tttgttgttatattgaacaaacaatggtatttttgagaataaaa 25868947  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 26496286 - 26496327
Alignment:
Q  65 gattacatctagtcttattctaggttttcactataacattgg 106  Q
    |||||||| | ||||||||||||||||||||||||| |||||    
T  26496286 gattacatttggtcttattctaggttttcactataaaattgg 26496327  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 4091541 - 4091594
Alignment:
Q  167 tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 220  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4091541 tgtgtataaagcagttcccatgtaaagttaaaaataacattgtaaatgacaaat 4091594  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 4091927 - 4091970
Alignment:
Q  19 tttgttgttttattgaacaaacaatggtgtttttgagaataaaa 62  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  4091927 tttgttgttatattgaacaaacaatggtatttttgagaataaaa 4091970  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 4435706 - 4435749
Alignment:
Q  19 tttgttgttttattgaacaaacaatggtgtttttgagaataaaa 62  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  4435706 tttgttgttatattgaacaaacaatggtatttttgagaataaaa 4435749  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 47520945 - 47520998
Alignment:
Q  167 tgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat 220  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47520945 tgtgtataaagcagttccgatgtaaagttaaaagtaacattgtaaatgacaaat 47520998  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 47521189 - 47521232
Alignment:
Q  19 tttgttgttttattgaacaaacaatggtgtttttgagaataaaa 62  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  47521189 tttgttgttatattgaacaaacaatggtatttttgagaataaaa 47521232  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 46595132 - 46595089
Alignment:
Q  19 tttgttgttttattgaacaaacaatggtgtttttgagaataaaa 62  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  46595132 tttgttgttatattgaacaaacaatggtatttttgagaataaaa 46595089  T

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