View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3414_high_9 (Length: 301)
Name: NF3414_high_9
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 14022128 - 14022402
Alignment:
| Q |
18 |
gagttaggtaaagagtcgtaatttcctccacccatacataactcttcatcttgttcctcttcttgatcttcatcaaaatccatttttgtagcaaaatttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14022128 |
gagttaggtaaagagtcgtaatttcctccacccatacataactcttcatcttgttcctcttcttgatcttcatcaaaatccatttttgtagcaaaatttg |
14022227 |
T |
|
| Q |
118 |
aagttaggttatcaatggttgctttgatgtagtgaataataatttgagctgaaagaagaaagaaaacaaaggaacattcactctcactttcactcttttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14022228 |
aagttaggttatcaatggttgctttgatgtagtgaataataatttgagctgaaagaagaaagaaaacaaaggaacattcactctcactttcactcttttt |
14022327 |
T |
|
| Q |
218 |
ctctatgtgc-nnnnnnnngttcaaaggaaaattttaatcttcatttgatattcatatacttttgaggttctgtg |
291 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14022328 |
ctctatgtgctttttttttgttcaaaggaaaatttcaatcttcatttgatattcatatacttttgaggttctgtg |
14022402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University