View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3414_low_12 (Length: 299)
Name: NF3414_low_12
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 5562898 - 5563163
Alignment:
| Q |
1 |
catgtcgttgttgactcttcaggttcattcttcgttcgacttacgctgtatctttctcatattcaaatgcgttgcgtttatgctttgtgattatgnnnnn |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5562898 |
catgtcgttgttgactcctcaggttcattcttcgttcgactaacgctgtatctttctcatattcaaatgcgttgcgtttatgctttgtgattatgtgttt |
5562997 |
T |
|
| Q |
101 |
nnnnctt-cagggattgagaaagtagtgagcaccattgattctattccgaaagttgaatgggattttgaagggattcattattttgataatggtcctctc |
199 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5562998 |
ttttttttcagggattgagaaagtagtgagcaccattgattctattccgaaagttgaatgggattttgaagggattcattattttgataatggtcctctc |
5563097 |
T |
|
| Q |
200 |
actgttcagtacttgtttgttttggatgctttgaacttttgcttctggcctggtacgtatgtagta |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5563098 |
actgttcagtacttgtttgttttggatgctttgaacttttgcttctggcctggtacgtatgtagta |
5563163 |
T |
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