View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3414_low_13 (Length: 295)
Name: NF3414_low_13
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 28 - 276
Target Start/End: Original strand, 6609602 - 6609850
Alignment:
| Q |
28 |
agcacagatccatcacatccctatgtaacacaaaaatgaaataacaaatcaacacataatattattaaagaataattttaacgatctaacggtatattaa |
127 |
Q |
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| T |
6609602 |
agcacagatccttcacatccctatgtaacacaaaaatgaaataacaaatcaacacataatattattaaagaataattttaacgatccaacggtatattaa |
6609701 |
T |
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| Q |
128 |
ttgacagtgtaaacaatcatggaaatgaagagacttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtca |
227 |
Q |
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| T |
6609702 |
ttgacagtgtaaaaaataatggaaatgaagagacttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtca |
6609801 |
T |
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| Q |
228 |
ttagctatagctgacaagatattatttttaacaattctgttcaggtttg |
276 |
Q |
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| T |
6609802 |
ttagctatagctgacaagatattatttttaacaattctgttcaggtttg |
6609850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 6602220 - 6602335
Alignment:
| Q |
161 |
cttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtcattagctatagctgacaagatattatttttaaca |
260 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||||| |
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| T |
6602220 |
cttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatcctagaatcattagctatagctgacaagatattgtctttaaca |
6602319 |
T |
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| Q |
261 |
attctgttcaggtttg |
276 |
Q |
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| T |
6602320 |
attttgttcagatttg |
6602335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 6602100 - 6602143
Alignment:
| Q |
28 |
agcacagatccatcacatccctatgtaacacaaaaatgaaataa |
71 |
Q |
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| T |
6602100 |
agcacagatccatcacatccctatgtaacacaaaaatgaaataa |
6602143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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