View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3414_low_15 (Length: 255)
Name: NF3414_low_15
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 43940227 - 43940449
Alignment:
| Q |
14 |
atataatataaaatgaatctttcggatgcacttgagaaacttgtagccctcgaaaccgaaagcatgacccatgacatcattaccaaaaccacaagaaaga |
113 |
Q |
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| T |
43940227 |
atataatataaaatgaatctttcggatgcacttgagaaacttgtagccctcgaaaccgaaagcatgacccatgacatcattaccaaaaccacaaga---- |
43940322 |
T |
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| Q |
114 |
taaccctaacaaactgatgagtgataccaaacttgactaaagaaaacacattccaagaagatatgacgatgacattctctaacacatcttacaaagttat |
213 |
Q |
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| T |
43940323 |
taaccctaacaaactgatgagtgataccaaacttgactaaagaaaacacattccaagaagatatgacgatgacattctctaacacatcttacaaagttat |
43940422 |
T |
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| Q |
214 |
ctctagttgaaaaacgattgttccata |
240 |
Q |
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| T |
43940423 |
ctctagttgaaaaacgattgttccata |
43940449 |
T |
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