View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3414_low_19 (Length: 240)
Name: NF3414_low_19
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 37621261 - 37621501
Alignment:
| Q |
18 |
acataagcagttggacttttatttcaagtttcattttgaaatagacaatgtcatttcttgaaattgtgtattacaaagaatcacaacacattaataaacc |
117 |
Q |
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| T |
37621261 |
acataagccgttggacttttatttcaagtttcattttgaaatagacaatgtcatttcttgaaattgtgtattacaaagaatcacaacacattaataaacc |
37621360 |
T |
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| Q |
118 |
cacttttgaaattccaaagct------------------ttcaatgtttcaaaaagtatagctctgtgatcaacaagcttgtttttatcatacataatgg |
199 |
Q |
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| T |
37621361 |
cacttttgaagttccaaagctttaatattttcaaaaaaattcaatgtttcaaaaagtatagccctgtgatcaacaagcttgtttttatcatacataatgg |
37621460 |
T |
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| Q |
200 |
tagcgtaatacctactaaaccaagttggtttgttgattttc |
240 |
Q |
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| T |
37621461 |
tagcgtaatacctactaaaccaagttggtttgttgattttc |
37621501 |
T |
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