View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3414_low_2 (Length: 853)
Name: NF3414_low_2
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-157; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 505 - 839
Target Start/End: Complemental strand, 926560 - 926219
Alignment:
| Q |
505 |
atggatgtgagcttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcaaccttgaaatccattacttcact |
604 |
Q |
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| T |
926560 |
atggatgtgagcttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcagccttgaaatccattacttcact |
926461 |
T |
|
| Q |
605 |
ttcttgcttgatcccaacttcgacctttcttccgtgcaacttccnnnnnnncatctccatgac----tttataaatagcctaaaaataaacacttgttga |
700 |
Q |
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| T |
926460 |
ttcttgcttgatcccaacttcgacctttcttccgtgcaacttcctttttttcatctccatgactttatttataaatagcctaaaaataaacacttgttga |
926361 |
T |
|
| Q |
701 |
atgcatccaaataaactcataaaagaaacacaagttatggaagaaacttttatttcctccaaaccatgtgcca---aagaagagatcatcgatttgaacc |
797 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
926360 |
atgcatccaaataaactcataaaagaaacacaagttatggaagaaacttttatttcctccaaaccatgtgccaaagaagaagagatcatcgatttgaacc |
926261 |
T |
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| Q |
798 |
aaatcacactccgatcctttcatctttctgaccttgatgatg |
839 |
Q |
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| T |
926260 |
aaatcacactccgatcctttaatctttctgaccttgatgatg |
926219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 221 - 500
Target Start/End: Complemental strand, 927297 - 927018
Alignment:
| Q |
221 |
tattatattatgagtaatctctataaggtgctgcttatgcttaggtctataaggtgcatcctaggaagatcaaagctatataaaattgtggtagattagt |
320 |
Q |
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| T |
927297 |
tattatattatgagtaatctctataaggtgctgcttatgcttaggtctataaggtgcatcctaggaagatcaaaggtatataaaattgtggtagattagt |
927198 |
T |
|
| Q |
321 |
gaagatgtaaatgatatacataaaaatggtgttgaaattatcaaattattagacactagtagcttagctatagattagagaccaccgtaattgatgcagt |
420 |
Q |
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| T |
927197 |
gaagatgtaaatgatatacataaaaatggtgttgaaattatcaaattattagacactagtagcttagctatagattagagaccaccgtaattgatgcagt |
927098 |
T |
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| Q |
421 |
gatgcctatccatcctgtttctgctctttagaaacccatcccacaagccatctcttgaatcacaaaacaactaaaatcac |
500 |
Q |
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| T |
927097 |
gatgcctatccatcctgtttctgctctttagaaacccatcccacaagccatctcttgaatcacaaaacaactaaaatcac |
927018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 928013 - 927849
Alignment:
| Q |
53 |
tccaactttaataagtttcatttttcaatcataattttcttttaatattgaaatctatctttagaatcaattctgatgtattacannnnnnnnnnnnnng |
152 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
928013 |
tccaactttaatacgtttcatttttcaatcataattttcttttaatattgaaatctatctttagaatcaattctgatgtattaca-tttttctttttttg |
927915 |
T |
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| Q |
153 |
tgatatttgaggtttgccttgttaagaaaggaaagtaacaggcaagcgaagttaaaacagtcttag |
218 |
Q |
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| T |
927914 |
tgatatttgaggtttgccttgttaagaaaggaaagtaataggcaagcgaagttaaaacagttttag |
927849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 737 - 839
Target Start/End: Complemental strand, 928641 - 928539
Alignment:
| Q |
737 |
atggaagaaacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatg |
836 |
Q |
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||||| |||||||||||||| || |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
928641 |
atggaggaaacttttatttcttcaaaaccatgtggcaaagaagaaatcattgatttgaaccaaatcacactccgatcctttaatctttctgaccttgatg |
928542 |
T |
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| Q |
837 |
atg |
839 |
Q |
| |
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||| |
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| T |
928541 |
atg |
928539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 734 - 838
Target Start/End: Complemental strand, 939569 - 939465
Alignment:
| Q |
734 |
gttatggaagaaacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttg |
833 |
Q |
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|||||||| |||||||||||||| ||||||||| ||| ||| ||| | | ||| |||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
939569 |
gttatggaggaaacttttatttcttccaaaccaagtggcaatgaacaaagcattgatttgaaccaaatcacactccgaccttttcatctttctgaccttg |
939470 |
T |
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| Q |
834 |
atgat |
838 |
Q |
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| T |
939469 |
atgat |
939465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 771 - 838
Target Start/End: Complemental strand, 935740 - 935673
Alignment:
| Q |
771 |
ccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatgat |
838 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||| |
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| T |
935740 |
ccaaagaagagatcattgatttgaaccaaatcacactccgatcttttaatctttctgacctcgatgat |
935673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 517 - 599
Target Start/End: Complemental strand, 924555 - 924473
Alignment:
| Q |
517 |
ttcataggtttggatcccatttaatgcatattcaagtcaaccaaggtaggcagagacatgaagcaaccttgaaatccattact |
599 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||| || |||||||||||| ||||| ||||||||||| ||||| |
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| T |
924555 |
ttcataggcttggatccattttaatgcatattcaagtcaaccatggcaggcagagacataaagcagccttgaaatcccttact |
924473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 928125 - 928079
Alignment:
| Q |
13 |
agcagagatatgatcatgtttagtgttctttctaatgatctccaact |
59 |
Q |
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| T |
928125 |
agcagagatatgatcatgtttagtgttctttctaatgatctccaact |
928079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 745 - 838
Target Start/End: Complemental strand, 924278 - 924185
Alignment:
| Q |
745 |
aacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatgat |
838 |
Q |
| |
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||||| |||||| ||||||||| ||||||||||||||| || ||| | | |||||||||||||||| || || |||||||||||||||||||| |
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| T |
924278 |
aacttctatttcttccaaaccaggtgccaaagaagagagaattgatctaacccaaatcacactccgaccccttaatctttctgaccttgatgat |
924185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 939044 - 938998
Alignment:
| Q |
13 |
agcagagatatgatcatgtttagtgttctttctaatgatctccaact |
59 |
Q |
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|||||||||||||| || || ||||||||||||| |||||||||||| |
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| T |
939044 |
agcagagatatgattattttcagtgttctttctactgatctccaact |
938998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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