View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3414_low_20 (Length: 238)
Name: NF3414_low_20
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_low_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 42512842 - 42512621
Alignment:
| Q |
17 |
aaattactggtagatgcattattacattaagttggttgtttcatttgagtgtcaaatagatcaaacaagacagcattttcataccatcaatacatttttc |
116 |
Q |
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| T |
42512842 |
aaattactggtagatgcattattacattaagttggttgtttcattcgagtgtcaaatagatcaaacaagacagcattttcataccatcaatacctttttc |
42512743 |
T |
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| Q |
117 |
accttattttgactccgaattaattcatcttgttatgcatattgcagaatatggatccattaagccctgcagtccttgtcaatgcagaactgttgccctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42512742 |
accttattttgactccgaattaattcatcttgttgtgcatattgcagaatatggatccattaagccctgcagtcattgtcaatgcagaactgttgccctt |
42512643 |
T |
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| Q |
217 |
ttatgtcggaagaagggttcgt |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
42512642 |
ttatgtcggaagaagggttcgt |
42512621 |
T |
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