View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3414_low_22 (Length: 235)
Name: NF3414_low_22
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2989842 - 2989627
Alignment:
| Q |
1 |
gtaacctgtgatgtttgcaaatccaatggcaagtgacccacctgctaaagcaagttcaccaacacgaccaaggaacaacattgaaatgatggaacgagaa |
100 |
Q |
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| T |
2989842 |
gtaacctgtgatgtttgcaaatccaatggcaagtgacccacctgctaaagcaagttcaccaacacgaccaaggaacaacattgaaatgatggaacgagaa |
2989743 |
T |
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| Q |
101 |
taaagtaataaacctgttaaaaccataggtaatgctatgtttgaaatatgtttggcttcattgagggcaagagaaaaatgggttttcttttgttgtttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2989742 |
taaagtaataaacctgttaaaaccataggtaatgctatgtttgaaatatgtttggcttcattgagggcaagagaaaaatgggttttcttttgttgtttga |
2989643 |
T |
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| Q |
201 |
atgttggggatttagg |
216 |
Q |
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|||||||||||||||| |
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| T |
2989642 |
atgttggggatttagg |
2989627 |
T |
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