View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3414_low_4 (Length: 446)
Name: NF3414_low_4
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_low_4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 56 - 446
Target Start/End: Original strand, 38816261 - 38816651
Alignment:
| Q |
56 |
atatacccttctctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagaca |
155 |
Q |
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| T |
38816261 |
atatacccttctctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagaca |
38816360 |
T |
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| Q |
156 |
aaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaa |
255 |
Q |
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| T |
38816361 |
aaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaa |
38816460 |
T |
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| Q |
256 |
gggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccata |
355 |
Q |
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| T |
38816461 |
gggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccata |
38816560 |
T |
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| Q |
356 |
aatatctagcaccgagacttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataacta |
446 |
Q |
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| T |
38816561 |
aatatctagcaccgagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataacta |
38816651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 163 - 312
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
163 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa |
262 |
Q |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
263 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
312 |
Q |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38816263 - 38816202
Alignment:
| Q |
1 |
tatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatatacc |
62 |
Q |
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| T |
38816263 |
tatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatatacc |
38816202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
| Q |
383 |
aaggtgtgtccagtgtccaacagatgtcagtctccaaca |
421 |
Q |
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| T |
35665559 |
aaggtgtgtccagtgtccaacacatgtcagtttccaaca |
35665597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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