View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3414_low_6 (Length: 392)
Name: NF3414_low_6
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3414_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 18737673 - 18738060
Alignment:
| Q |
1 |
gtataagattttgtatgacatgtgagaactagacccatactcatcgttgcttttatcccccactcaactaaccaacaaatttctgttatgctgttcaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18737673 |
gtataagattttgtatgacatgtgagaactagacccatactcattgttgcttttattccccactcaactaaccaacaaatttctgttatgctgttcaact |
18737772 |
T |
|
| Q |
101 |
atatctgaaacatcataacagaaaactagttaagtggtttataactgtaataatcccagtaactgttataaacataaattaaaatggaaatttcaattta |
200 |
Q |
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| T |
18737773 |
atatctgaaacatcataacagaaaactagttaagtggtttataactgtaataaccccagtaactgttataaacataaattaaaatggaaatttcaattta |
18737872 |
T |
|
| Q |
201 |
aacttggg-nnnnnnnctgaatttctttgtttcatttcagcaaaacctaatgcttataaaaggcattattcacttcacattatcttcatactcagttgtt |
299 |
Q |
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| T |
18737873 |
aacttgggaaaaaaaactgaatttctttttttcatttcagcaaaacctaatgcttataaaaggcattattcacttcacattatcttcatactcagttgtt |
18737972 |
T |
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| Q |
300 |
taatcttgaaacaattcaattttgttatatcttctcttttgcacattctcac-aaaaatctttcgaccatgaaaaacgacaaagaatc |
386 |
Q |
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| T |
18737973 |
taatcttgaaacgattcaattttgttatatcttctcttttgcacattctcacaaaaaatctttcaaccatgaaaaacaacaaagaatc |
18738060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 18716997 - 18717392
Alignment:
| Q |
1 |
gtataagattttgtatgacatgtgagaactagacccatactcatcgttgcttttatcccccactcaactaaccaacaaatttctgttatgctgttcaact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
18716997 |
gtataagattttgtatgacatgtgagaactagacccatattcattgttgcttttatcccccactcaactaaccaacaaatttctgttatgccgttaaact |
18717096 |
T |
|
| Q |
101 |
atatctgaaacatca---taacagaaaactagttaagtggtttataactgtaataatcccagtaactgttataaacataaattaaaatggaaatttcaat |
197 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18717097 |
atatctgaaacatcattgtaacagaaaactagttaagtggtttataactgtaataatcccagtaactgttataaacataaattaaaattaaaatttcaat |
18717196 |
T |
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| Q |
198 |
ttaaactt-gggnnnnnnnctgaatttctttgtttcatttcagcaaaacctaatgct--tataaaaggcattattcacttcacattatcttcatactcag |
294 |
Q |
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||||| || || |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18717197 |
ttaaatttcggaaaaaaaactgaatttctttttttcatttcagcaaaacctaatgcttatataaaaggcattattcacttcacattatcttcatactcag |
18717296 |
T |
|
| Q |
295 |
ttgtttaatcttgaaacaa-----ttcaattttgttatatcttctcttttgcacattctcac-aaaaatctttcgaccatgaaaaacgacaaagaa |
384 |
Q |
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||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |||| |
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| T |
18717297 |
ttgtttaattttgaaacaacttctttcaattctgttatatcttctcttttgcacattctcacaaaaaatctttcaaccatgaaaaacaacacagaa |
18717392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 18648545 - 18648742
Alignment:
| Q |
1 |
gtataagattttgtatgacatgtgagaactagacccatactcatcgttgcttttatcccccactcaactaaccaacaaatttctgttatgctgttcaact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18648545 |
gtataagattttgtatgacatgtgagaactagacccatactcattgttgcttttatcccccactcaactaaccaacaaatttctgttatgctgttcaact |
18648644 |
T |
|
| Q |
101 |
atatctgaaacatcataacagaaaactagttaagtggtttataactgtaataatcccagtaactgttataaacataaattaaaatggaaatttcaattta |
200 |
Q |
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|||||||||||||||||||||||||||| |||||| ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
18648645 |
atatctgaaacatcataacagaaaactacttaagtagttagtaactgtaacaatcccagtaactg---taaacataaattaaaatggaaattttaattta |
18648741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 243 - 384
Target Start/End: Original strand, 18648781 - 18648928
Alignment:
| Q |
243 |
aacctaatgcttataaaaggcattattcacttcacattatcttcatactcagttgtttaatcttgaaacaa-----ttcaattttgttatatcttctctt |
337 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
18648781 |
aacctactgcttataaaaggcattattcacttcacattatattcatactgagttgtttaatcttgaaacaacttctttcaattctgttatatcttctctt |
18648880 |
T |
|
| Q |
338 |
ttgcacattctcac-aaaaatctttcgaccatgaaaaacgacaaagaa |
384 |
Q |
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| ||||||||||| ||||||||||| | |||||| ||| |||||||| |
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| T |
18648881 |
tctcacattctcacaaaaaatctttcaatcatgaagaacaacaaagaa |
18648928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 273 - 384
Target Start/End: Original strand, 18684543 - 18684660
Alignment:
| Q |
273 |
ttcacattatcttcatactcagttgtttaatcttgaaacaa-----ttcaattttgttatatcttctcttttgcacattctca-caaaaatctttcgacc |
366 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| |||||||||| |||||||||||| ||| |
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| T |
18684543 |
ttcacattatattcatactcagttgtttaatcttgaaacaacttctttcaattctgttatatcttcactttctcacattctcaccaaaaatctttcaacc |
18684642 |
T |
|
| Q |
367 |
atgaaaaacgacaaagaa |
384 |
Q |
| |
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||||||||| | |||||| |
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| T |
18684643 |
atgaaaaacaataaagaa |
18684660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 18671270 - 18671340
Alignment:
| Q |
243 |
aacctaatgcttataaaaggcattattcacttcacattatcttcatactcagttgtttaatcttgaaacaa |
313 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
18671270 |
aacctaatggttataaaaacaattattcacttcacattatcttcatactgagttgtttaatctagaaacaa |
18671340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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