View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3414_low_8 (Length: 347)

Name: NF3414_low_8
Description: NF3414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3414_low_8
NF3414_low_8
[»] chr5 (2 HSPs)
chr5 (1-332)||(30440603-30440934)
chr5 (21-315)||(37719392-37719698)
[»] chr1 (2 HSPs)
chr1 (21-332)||(16961006-16961333)
chr1 (21-332)||(25868579-25868903)
[»] chr6 (3 HSPs)
chr6 (21-332)||(4435381-4435705)
chr6 (246-332)||(4091840-4091926)
chr6 (16-67)||(4091732-4091783)
[»] chr3 (2 HSPs)
chr3 (21-332)||(46595133-46595457)
chr3 (18-55)||(46595481-46595518)
[»] chr8 (1 HSPs)
chr8 (131-241)||(38016540-38016650)
[»] chr4 (1 HSPs)
chr4 (237-332)||(47521093-47521188)
[»] scaffold0007 (1 HSPs)
scaffold0007 (155-202)||(81770-81817)
[»] chr2 (1 HSPs)
chr2 (166-226)||(923035-923095)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 30440934 - 30440603
Alignment:
Q  1 ctctcccggtcactgctcttctcttctcctctcctagtcgatgctctcctcttcttcatcgtcatcgcctctagctccagccaccttccgtaaaccacca 100  Q
    |||| ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  30440934 ctcttccggtcactgctcttctcttctcctctctcagtcgatgctctgctcttcttcatcgtcattgcctctagctccagccaccttacgtaaaccacca 30440835  T
Q  101 caagactatgagtcgagactgaacatattcatctcacatcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaataca 200  Q
    ||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  30440834 caagactgtgagttgagaatgaacatattcatctcacatcaaatccagatctcaaaatcctctacatctagatttgttggttttaacccatgaaaattca 30440735  T
Q  201 ttgattttgttgacctaattccattttcccaggtattcaatttgttgtatgctaatttgttaattttagaattaaatatctaggtttaattatgtttata 300  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||     
T  30440734 ttgattttgctgacctaattccattttcccaggtattcaatttgttgtatgctaatttgtgaattttagaattaaatatctgggtttatttatgtttatt 30440635  T
Q  301 tgatttaacgttaaattatgtgaattttgtat 332  Q
    |||||||||||||||||| |||||||||||||    
T  30440634 tgatttaacgttaaattaagtgaattttgtat 30440603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 37719698 - 37719392
Alignment:
Q  21 ctcttctcctctcctagtcgatgctctcctcttcttcatcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagact 120  Q
    |||||||||||||| |||||||||||| ||||||   ||| |||||| ||| |||||| |||| ||||| ||||||||||| ||||  |||||||||| |    
T  37719698 ctcttctcctctcccagtcgatgctctgctcttc---atcctcatcgactcaagctccggccatcttccataaaccaccacgagaccgtgagtcgagagt 37719602  T
Q  121 gaacatattcat------ctcacatcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgttgac 214  Q
    ||||||||||||      ||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||||| |||||||||||| ||||    
T  37719601 gaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaa-ccatgaaaaaacattgattttgctgac 37719503  T
Q  215 ctaattccattttcccaggtatt----------caatttgttgtatgctaatttgttaattttagaattaaatatctaggtttaattatgtttatatgat 304  Q
    |||||| |||||  |||||||||          |||| || |||||||||||||| ||||||||||||||||||||| |||||| ||| |||||| ||||    
T  37719502 ctaatttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgctaattttagaattaaatatctgggtttatttaagtttatttgat 37719403  T
Q  305 ttaacgttaaa 315  Q
    |||||||||||    
T  37719402 ttaacgttaaa 37719392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 332
Target Start/End: Complemental strand, 16961333 - 16961006
Alignment:
Q  21 ctcttctcctctcctagtcgatgctctcctcttcttcatcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagact 120  Q
    |||||||||||||| |||||||||||| ||||| |||||| |||||| ||| |||||| |||||||||||||||||||||| |||| ||||||||||| |    
T  16961333 ctcttctcctctcccagtcgatgctctgctctttttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccatgagtcgagagt 16961234  T
Q  121 gaacatattcat------ctcacatcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgttgac 214  Q
    ||||||||||||      ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  16961233 gaacatattcatattcatctcgcatcaaatccagatctcaaaatcctctgcatctcgatttgttggttttaacccatgaaaaaacattgattttgctgac 16961134  T
Q  215 ctaattccattttcccaggtatt----------caatttgttgtatgctaatttgttaattttagaattaaatatctaggtttaattatgtttatatgat 304  Q
    ||||||||||||  |||||||||          |||| || |||||||||||||||||||||||||||||||||| | |||||| |||||||||| | ||    
T  16961133 ctaattccatttctccaggtattcaatctatcacaatctgatgtatgctaatttgttaattttagaattaaatatttgggtttatttatgtttatttaat 16961034  T
Q  305 ttaacgttaaattatgtgaattttgtat 332  Q
    |||||||||||||| |||||||||||||    
T  16961033 ttaacgttaaattaagtgaattttgtat 16961006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 21 - 332
Target Start/End: Original strand, 25868579 - 25868903
Alignment:
Q  21 ctcttctcctctcctagtcgatgctctcctcttcttcatcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagact 120  Q
    |||||||||||||| |||  ||||||| ||||||   ||| |||||| ||| |||||| |||||||||||||||||||||| ||||  ||||||||||      
T  25868579 ctcttctcctctcccagtaaatgctctgctcttc---atcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagaga 25868675  T
Q  121 gaacata------ttcatctcacatcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgttgac 214  Q
    |||||||      |||||||| ||||||||||||||||| ||||||||| |||||| || |||||||||||||||||||||| |||||||||||| ||||    
T  25868676 gaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcaatatgttggttttaacccatgaaaaaacattgattttgctgac 25868775  T
Q  215 ctaattccattttcccaggtatt----------caatttgttgtatgctaatttgttaattttagaattaaatatctaggtttaattatgtttatatgat 304  Q
    ||||||||||||  |||||||||          |||| || ||||||||||||| |||||||||||||||||||||| |||||| ||| |||||| ||||    
T  25868776 ctaattccatttatccaggtattcaatctatcccaatctgatgtatgctaatttattaattttagaattaaatatctgggtttatttaagtttatttgat 25868875  T
Q  305 ttaacgttaaattatgtgaattttgtat 332  Q
    |||||||||||||| |||||||||||||    
T  25868876 ttaacgttaaattaagtgaattttgtat 25868903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 21 - 332
Target Start/End: Original strand, 4435381 - 4435705
Alignment:
Q  21 ctcttctcctctcctagtcgatgctctcctcttcttcatcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagact 120  Q
    |||||||||||||| |||||||||||| ||||||   ||| |||||| ||| |||||| |||||||||||||||||||||| ||||  |||||||||| |    
T  4435381 ctcttctcctctcccagtcgatgctctgctcttc---atcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagt 4435477  T
Q  121 gaacata------ttcatctcacatcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgttgac 214  Q
    |||||||      |||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  4435478 gaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgac 4435577  T
Q  215 ctaattccattttcccaggtatt----------caatttgttgtatgctaatttgttaattttagaattaaatatctaggtttaattatgtttatatgat 304  Q
    |||||| |||||  |||||||||          |||| || |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||    
T  4435578 ctaatttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgat 4435677  T
Q  305 ttaacgttaaattatgtgaattttgtat 332  Q
    |||||||||||||| |||||||||||||    
T  4435678 ttaacgttaaattaagtgaattttgtat 4435705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 4091840 - 4091926
Alignment:
Q  246 tgtatgctaatttgttaattttagaattaaatatctaggtttaattatgtttatatgatttaacgttaaattatgtgaattttgtat 332  Q
    ||||||||||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||||    
T  4091840 tgtatgctaatttgttaatttcagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattttgtat 4091926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 4091732 - 4091783
Alignment:
Q  16 ctcttctcttctcctctcctagtcgatgctctcctcttcttcatcgtcatcg 67  Q
    |||||||| |||||||||| | |||||||||| |||||||||||| ||||||    
T  4091732 ctcttctcctctcctctcccaatcgatgctctgctcttcttcatcctcatcg 4091783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 21 - 332
Target Start/End: Complemental strand, 46595457 - 46595133
Alignment:
Q  21 ctcttctcctctcctagtcgatgctctcctcttcttcatcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagact 120  Q
    |||||||||||||| |||||||||||| ||||||   ||| |||||| ||| |||||| |||||||||||||||||||||| ||||  |||||||||| |    
T  46595457 ctcttctcctctcccagtcgatgctctgctcttc---atcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagt 46595361  T
Q  121 gaacatattcat------ctcacatcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgttgac 214  Q
    ||||||||||||      ||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  46595360 gaacatattcatattcatctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgac 46595261  T
Q  215 ctaattccattttcccaggtatt----------caatttgttgtatgctaatttgttaattttagaattaaatatctaggtttaattatgtttatatgat 304  Q
    |||||| |||||  |||||||||          |||| || |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||    
T  46595260 ctaatttcatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgat 46595161  T
Q  305 ttaacgttaaattatgtgaattttgtat 332  Q
    |||||||||||||| |||||||||||||    
T  46595160 ttaacgttaaattaagtgaattttgtat 46595133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 46595518 - 46595481
Alignment:
Q  18 cttctcttctcctctcctagtcgatgctctcctcttct 55  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  46595518 cttctcttctcctctccaagtcgatgctctgctcttct 46595481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 38016650 - 38016540
Alignment:
Q  131 atctcacatcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgaaaatacattgattttgttgacctaattccattttccc 230  Q
    |||||||||||||| ||||||| |||||| ||| ||||| ||| ||||||||| ||||||| ||||||||||||||||| | ||||||||||||||  ||    
T  38016650 atctcacatcaaattcagatcttaaaatcatctgcatcttgatctgttggtttcaacccattaaaatacattgattttgctcacctaattccatttctcc 38016551  T
Q  231 aggtattcaat 241  Q
    |||||||||||    
T  38016550 aggtattcaat 38016540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 237 - 332
Target Start/End: Original strand, 47521093 - 47521188
Alignment:
Q  237 tcaatttgttgtatgctaatttgttaattttagaattaaatatctaggtttaattatgtttatatgatttaacgttaaattatgtgaattttgtat 332  Q
    ||||| || ||||||||||||||||||||||||||| |||||| | ||||||  |||||| || |||||||||||||||||| |||||||||||||    
T  47521093 tcaatctgatgtatgctaatttgttaattttagaatcaaatatatgggtttatatatgttcatttgatttaacgttaaattaagtgaattttgtat 47521188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 81817 - 81770
Alignment:
Q  155 aaatcctctacatctcgatttgttggttttaacccatgaaaatacatt 202  Q
    ||||| ||||||||||||| ||||||||| |||||||||||| |||||    
T  81817 aaatcatctacatctcgatctgttggtttcaacccatgaaaacacatt 81770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 923035 - 923095
Alignment:
Q  166 atctcgatttgttggttttaacccatgaaaatacattgattttgttgacctaattccattt 226  Q
    ||||| || ||||||||| || ||| ||||| | ||||| |||||||||||||||||||||    
T  923035 atctccatctgttggtttcaatccaagaaaacaaattgaatttgttgacctaattccattt 923095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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