View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3415_high_1 (Length: 907)

Name: NF3415_high_1
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3415_high_1
NF3415_high_1
[»] chr4 (42 HSPs)
chr4 (8-888)||(48885102-48885982)
chr4 (8-855)||(48869449-48870296)
chr4 (473-879)||(48467555-48467983)
chr4 (473-876)||(48476417-48476846)
chr4 (474-879)||(48483730-48484164)
chr4 (9-286)||(48875326-48875599)
chr4 (54-213)||(48735682-48735844)
chr4 (25-181)||(7789670-7789826)
chr4 (52-183)||(45372425-45372556)
chr4 (31-180)||(48862823-48862975)
chr4 (29-187)||(7774174-7774332)
chr4 (52-181)||(7770985-7771114)
chr4 (26-224)||(48170928-48171129)
chr4 (52-171)||(48156795-48156914)
chr4 (54-137)||(49041508-49041591)
chr4 (52-157)||(48891014-48891119)
chr4 (30-181)||(33134169-33134323)
chr4 (39-137)||(7904657-7904755)
chr4 (29-138)||(7877344-7877453)
chr4 (25-181)||(50668624-50668780)
chr4 (55-158)||(7238091-7238194)
chr4 (25-174)||(45366559-45366711)
chr4 (52-185)||(48898299-48898435)
chr4 (52-205)||(7907882-7908035)
chr4 (29-172)||(48148027-48148173)
chr4 (25-140)||(7822591-7822706)
chr4 (21-183)||(7813059-7813221)
chr4 (55-187)||(45385158-45385290)
chr4 (319-412)||(48875230-48875331)
chr4 (30-224)||(33133575-33133772)
chr4 (25-183)||(7800216-7800374)
chr4 (85-187)||(48902525-48902627)
chr4 (133-183)||(48852262-48852312)
chr4 (55-160)||(7765223-7765328)
chr4 (55-160)||(7786045-7786150)
chr4 (8-137)||(37827318-37827447)
chr4 (382-431)||(48882577-48882625)
chr4 (54-155)||(49044599-49044700)
chr4 (54-142)||(47207554-47207642)
chr4 (52-110)||(50251176-50251234)
chr4 (9-103)||(48852316-48852413)
chr4 (62-131)||(49048977-49049046)
[»] chr7 (1 HSPs)
chr7 (473-882)||(38819896-38820327)
[»] chr8 (6 HSPs)
chr8 (25-174)||(15348450-15348599)
chr8 (57-160)||(12194903-12195006)
chr8 (61-160)||(12199909-12200008)
chr8 (57-160)||(12439331-12439434)
chr8 (61-160)||(12444337-12444436)
chr8 (52-183)||(4032284-4032415)
[»] chr1 (5 HSPs)
chr1 (13-142)||(24309797-24309926)
chr1 (53-138)||(24322086-24322171)
chr1 (15-142)||(24340034-24340161)
chr1 (27-142)||(24415457-24415571)
chr1 (52-130)||(24366787-24366865)
[»] scaffold0508 (1 HSPs)
scaffold0508 (19-131)||(11893-12005)
[»] chr5 (6 HSPs)
chr5 (82-142)||(42562729-42562789)
chr5 (19-142)||(29712804-29712927)
chr5 (31-131)||(29695783-29695883)
chr5 (46-131)||(178650-178738)
chr5 (52-166)||(1812021-1812135)
chr5 (52-171)||(29687642-29687761)
[»] chr6 (1 HSPs)
chr6 (29-122)||(21979989-21980082)
[»] chr3 (4 HSPs)
chr3 (77-181)||(11015918-11016022)
chr3 (77-174)||(11024930-11025027)
chr3 (54-181)||(11006332-11006459)
chr3 (54-140)||(47452277-47452363)


Alignment Details
Target: chr4 (Bit Score: 765; Significance: 0; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 8 - 888
Target Start/End: Complemental strand, 48885982 - 48885102
Alignment:
Q  8 gtgagatgaagagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttaca 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  48885982 gtgagatgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttaca 48885883  T
Q  108 aacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcggcaatggaatcgtcttcttctcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48885882 aacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcggcaatggaatcgtcttcttctcc 48885783  T
Q  208 atgcgcctttttccaatgcgacagttgtttgtttttctttgtttagggttttgaattgaagacccaactcttgatttatttagttgaaatgatcattaag 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48885782 atgcgcctttttccaatgcgacagttgtttgtttttctttgtttagggttatgaattgaagacccaactcttgatttatttagttgaaatgatcatcaag 48885683  T
Q  308 acccattttccatttatgaatcatttttgcaaggcatgtctcttatttagggttagtctttttaacacaatgaaatgaaataaaacgacgcattggtttt 407  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48885682 acccattttccatttatgaatcattttcgcaaggcatgtctcttatttagggttagtctttttaacacaatgaaatgaaataaaacgacgcattggtttt 48885583  T
Q  408 tgtacccaaaaaataaaggcaaaacnnnnnnnnnnnnnnnnacagaaaacgaaagtgtgaccgatatattccaaaaggatcatattttcatgtgggccgt 507  Q
    ||||||||||||||||||||||||                 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  48885582 tgtacccaaaaaataaaggcaaaatatatttttttttttttacagaaaacgaaagtgtgaccgacatattccaaaaggttcatattttcatgtgggccgt 48885483  T
Q  508 aatgtcgtgaagtcctctttccgcttatgatttccaagagaaggactccgaaacttcggtgagtatatgccttttctgacataatcgggaggcacatacc 607  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48885482 aatatcgtgaagtcctctttccgcttatgatttccaagagaaggactgcaaaacttcagtgagtatatgccttttctgacataatcgggaggcacatacc 48885383  T
Q  608 cacaacaaaaggcaatacatgtggttagagtcatccaaggaacaacgtcattgattaaaatttacttactaagcacccacaatcctgcttgtatttgctt 707  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48885382 cactacaaaaggcaatacatgtggttagagtcatccaaggaacaacgtcattgattaaaatttacttactaagcacccacaatcctgcttgtatttgctt 48885283  T
Q  708 caagttcatacttctcaaaaagtttagccatactaaaatctgatatctttggattcatctcatggtctaacaaaacattactagctttaatatctcggtg 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48885282 caagttcatacttctcaaaaagtttagccatactaaaatctgatatctttggattcatctcatggtctaacaaaacattactagctttaatatctcggtg 48885183  T
Q  808 gattatagtaaaacttgagtactcttggagataaagaaggccttgagtaatttcttcaatgatattcacacgcttggtcca 888  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  48885182 gattatagtaaaatttgagtactcttggagataaagaaggccttgagtaatcccttcaatgatattcacacgcttggtcca 48885102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 8 - 855
Target Start/End: Complemental strand, 48870296 - 48869449
Alignment:
Q  8 gtgagatgaagagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttaca 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  48870296 gtgagatgaacagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttaca 48870197  T
Q  108 aacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcggcaatggaatcgtcttcttctcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48870196 aacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcggcaatggaatcgtcttcttctcc 48870097  T
Q  208 atgcgcctttttccaatgcgacagttgtttgtttttctttgtttagggttttgaattgaagacccaactcttgatttatttagttgaaatgatcattaag 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48870096 atgcgcctttttccaatgcgacagttgtttgtttttctttgtttagggttatgaattgaagacccaactcttgatttatttagttgaaatgatcatcaag 48869997  T
Q  308 acccattttccatttatgaatcatttttgcaaggcatgtctcttatttagggttagtctttttaacacaatgaaatgaaataaaacgacgcattggtttt 407  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48869996 acccattttccatttatgaatcattttcgcaaggcatgtctcttatttagggttagtctttttaacacaatgaaatgaaataaaacgacgcattggtttt 48869897  T
Q  408 tgtacccaaaaaataaaggcaaaacnnnnnnnnnnnnnnnnacagaaaacgaaagtgtgaccgatatattccaaaaggatcatattttcatgtgggccgt 507  Q
    ||||||||||||||||||||||||                 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  48869896 tgtacccaaaaaataaaggcaaaatatatttttttttttttacagaaaacgaaagtgtgaccgacatattccaaaaggttcatattttcatgtgggccgt 48869797  T
Q  508 aatgtcgtgaagtcctctttccgcttatgatttccaagagaaggactccgaaacttcggtgagtatatgccttttctgacataatcgggaggcacatacc 607  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48869796 aatatcgtgaagtcctctttccgcttatgatttccaagagaaggactgcaaaacttcagtgagtatatgccttttctgacataatcgggaggcacatacc 48869697  T
Q  608 cacaacaaaaggcaatacatgtggttagagtcatccaaggaacaacgtcattgattaaaatttacttactaagcacccacaatcctgcttgtatttgctt 707  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48869696 cactacaaaaggcaatacatgtggttagagtcatccaaggaacaacgtcattgattaaaatttacttactaagcacccacaatcctgcttgtatttgctt 48869597  T
Q  708 caagttcatacttctcaaaaagtttagccatactaaaatctgatatctttggattcatctcatggtctaacaaaacattactagctttaatatctcggtg 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48869596 caagttcatacttctcaaaaagtttagccatactaaaatctgatatctttggattcatctcatggtctaacaaaacattactagctttaatatctcggtg 48869497  T
Q  808 gattatagtaaaacttgagtactcttggagataaagaaggccttgagt 855  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48869496 gattatagtaaaatttgagtactcttggagataaagaaggccttgagt 48869449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 473 - 879
Target Start/End: Original strand, 48467555 - 48467983
Alignment:
Q  473 atattccaaaaggatcatattttcatgtgggccgtaatgtcgtgaagtcctctttccgcttatgatttccaagagaaggactccgaaact---------- 562  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||              
T  48467555 atattccaaaaggttcatattttcatgtgggccgtaatatcgtgaagtcctctttccgcttatgatttgcaagagaaggactccaaaactataaacatca 48467654  T
Q  563 ----tcggtgagtatatgccttttctgacataatcgggaggcacatacccacaacaaaaggcaatacatgtggttagagtcatccaaggaacaacg---- 654  Q
        |||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||         
T  48467655 tacttcggggagtatatgccttttctgacatactcgggaggcacgtacccactataaaaggcaatacacgtggttagagtcatccaaggaacaacaataa 48467754  T
Q  655 ----tcattgattaaaatttacttactaagcacccacaatcctgcttgtatttgcttcaagttcatacttctcaaaaagtttagccatactaaaatctga 750  Q
        | |||||||||||||||||||||| |  ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  48467755 cgcattattgattaaaatttacttactacgttcccacgatcctgcttgtattcgcttcaagttcatacttctcaaaaagtttagccataccaaaatctga 48467854  T
Q  751 tatctttggattcatctcatggtctaacaaaacattactagctttaatatctcggtggattatagtaaaacttgagtactcttggagataaagaaggcct 850  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48467855 tatctttggattcatctcatggtctaacaaaacattactagctttaatatctcggtggattatagtaaaatttgagtactcttggagataaagaaggcct 48467954  T
Q  851 tgagtaatttcttcaatgatattcacacg 879  Q
    ||||| ||  |||||||||||||||||||    
T  48467955 tgagtgatcccttcaatgatattcacacg 48467983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 473 - 876
Target Start/End: Original strand, 48476417 - 48476846
Alignment:
Q  473 atattccaaaaggatcatattttcatgtgggccgtaatgtcgtgaagtcctctttccgcttatgatttccaagagaaggactccgaaact---------- 562  Q
    ||||||||||||| ||||||||||||||||||||||||  | ||||||| | ||||| |||||||||| ||||||||| ||||| |||||              
T  48476417 atattccaaaaggttcatattttcatgtgggccgtaataacatgaagtcttgtttccacttatgatttgcaagagaagaactccaaaactataaacgtcg 48476516  T
Q  563 ----tcggtgagtatatgccttttctgacataatcgggaggcacatacccacaacaaaaggcaatacatgtggttagagtcatccaaggaacaa------ 652  Q
        | |||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |  |||| ||| |||||| |||  | |||||||          
T  48476517 tacttgggtgagtatatgccttttctgacatactcgggaggtacatacccactacaaaagccgttacaagtgattagagacattgagggaacaaacaaag 48476616  T
Q  653 ------cgtcattgattaaaatttacttactaagcacccacaatcctgcttgtatttgcttcaagttcatacttctcaaaaagtttagccatactaaaat 746  Q
          |   ||| ||||  ||| |||||||| |  ||||| ||||||||||| ||||||||||||||||||||  |||||| | ||||||||| |||||    
T  48476617 ataatacactattaattatgattaacttactacgttcccacgatcctgcttgtgtttgcttcaagttcatactttccaaaaattctagccataccaaaat 48476716  T
Q  747 ctgatatctttggattcatctcatggtctaacaaaacattactagctttaatatctcggtggattatagtaaaacttgagtactcttggagataaagaag 846  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  48476717 ctgaaatcttaggattcatctcatggtctaacaaaacattactagctttaatatctcggtggattatagtaaaatttgagtactcttggagataaagaag 48476816  T
Q  847 gccttgagtaatttcttcaatgatattcac 876  Q
    ||||||||| ||| ||||||||||||||||    
T  48476817 gccttgagttattccttcaatgatattcac 48476846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 160; E-Value: 9e-85
Query Start/End: Original strand, 474 - 879
Target Start/End: Original strand, 48483730 - 48484164
Alignment:
Q  474 tattccaaaaggatcatattttcatgtgggccgtaatgtcgtgaagtcctctttccgcttatgatttccaagagaaggactccgaaact----------- 562  Q
    |||||||||||  ||||||||||||||| ||||||||   |||||||||||||||| |||||||||| ||||||||| ||||| |||||               
T  48483730 tattccaaaagattcatattttcatgtgtgccgtaataatgtgaagtcctctttccacttatgatttgcaagagaagaactccaaaactataaacgtcgt 48483829  T
Q  563 ---tcggtgagtatatgccttttctgacataatcgggaggcacatacccacaacaaa------aggca-atacatgtggttagagtcatccaaggaacaa 652  Q
       | |||||||||||||||||| ||||||| || ||||| |||||||||| |||||      ||||  || || ||| |||||| |||| | |||||||    
T  48483830 acttgggtgagtatatgccttttttgacatactccggaggtacatacccactacaaagtacaaaggccgattcaagtgattagagacatcgagggaacaa 48483929  T
Q  653 cg--------tcattgattaaaatttacttactaagcacccacaatcctgcttgtatttgcttcaagttcatacttctcaaaaagtttagccatactaaa 744  Q
     |        | | ||||||  |||||||||||| |  || || ||||||||||| ||||||||||||||||||||| | |||| | ||||||||| |||    
T  48483930 agataacacattactgattatgatttacttactatgttcctactatcctgcttgtgtttgcttcaagttcatacttcccgaaaattctagccataccaaa 48484029  T
Q  745 atctgatatctttggattcatctcatggtctaacaaaacattactagctttaatatctcggtggattatagtaaaacttgagtactcttggagataaaga 844  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48484030 atctgatatctttggattcatctcatggtctaacaaaacattactagctttaatatctcggtggattatagtaaaatttgagtactcttggagataaaga 48484129  T
Q  845 aggccttgagtaatttcttcaatgatattcacacg 879  Q
    ||||||||||||||| ||||||||| |||||||||    
T  48484130 aggccttgagtaattccttcaatgacattcacacg 48484164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 9 - 286
Target Start/End: Complemental strand, 48875599 - 48875326
Alignment:
Q  9 tgagatgaagagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaa 108  Q
    ||||||||| ||||| |||||||   ||||||| || ||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||    
T  48875599 tgagatgaatagaattctacgagacggtgttgccgcggtgagttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaa 48875500  T
Q  109 acgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcggcaatggaatcgtcttcttctcca 208  Q
    ||||||||||||||||| ||||| || || | || |||||||||||||||||| ||||| || ||| | |||| ||||| ||||||||||||||||||||    
T  48875499 acgcatttgaaacgaattagagacttgactgataacctcagcagaatttgaacgatcaagtcctgaggtagatccggcagtggaatcgtcttcttctcca 48875400  T
Q  209 tgcgcctttttccaatgcgacagttgtttgtttttctttgtttagggttttgaattgaagacccaactcttgatttat 286  Q
    |||||||||||||||||  ||    | |||||| |||| |||||||||| ||||||||||||||| ||||||||||||    
T  48875399 tgcgcctttttccaatgacac----ggttgtttctcttggtttagggttatgaattgaagacccagctcttgatttat 48875326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 48735682 - 48735844
Alignment:
Q  54 aaaatgtgaatttgcaaaatggggatc---ggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagc 150  Q
    ||||||||||||||||||||  | |||   |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||     
T  48735682 aaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctcaga 48735781  T
Q  151 agaatttgaactatcaattcatgatgcagatgcggcaatggaatcgtcttcttctccatgcgc 213  Q
    ||||||||||||||||| |||||| |||||  ||||| |||| || ||||||| ||| |||||    
T  48735782 agaatttgaactatcaactcatgaggcagaaacggcagtggattcttcttcttatccgtgcgc 48735844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 7789826 - 7789670
Alignment:
Q  25 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaa 124  Q
    |||| ||||||||||||||  |  || ||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||  |    
T  7789826 ctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacata 7789727  T
Q  125 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagat 181  Q
    ||||||| |||||||| | ||||| ||||||||| | ||||| ||||||| ||||||    
T  7789726 taagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagat 7789670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 52 - 183
Target Start/End: Original strand, 45372425 - 45372556
Alignment:
Q  52 tgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 151  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||| | ||| || |    
T  45372425 tgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagta 45372524  T
Q  152 gaatttgaactatcaattcatgatgcagatgc 183  Q
    |||||||||  |||||||||||| ||| ||||    
T  45372525 gaatttgaatcatcaattcatgaggcatatgc 45372556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 31 - 180
Target Start/End: Complemental strand, 48862975 - 48862823
Alignment:
Q  31 gtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcg---gagataagagaaaaccaagacttacaaacgcatttgaaacgaataa 127  Q
    |||||||||||||| || || |||||||||||||||||||| || |||||    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  48862975 gtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataa 48862876  T
Q  128 gagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcaga 180  Q
    |||| |||||||||| ||| ||||| ||| | |  |||||||||||| |||||    
T  48862875 gagacttcaccggtaaccttagcaggattaggatgatcaattcatgaggcaga 48862823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 7774174 - 7774332
Alignment:
Q  29 gagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataag 128  Q
    ||||||| |||| ||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||| ||||||||| |||||||    
T  7774174 gagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataag 7774273  T
Q  129 agaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcggca 187  Q
    ||| |||||||| |||| || ||  |||||||  |||||||||||| | |||| |||||    
T  7774274 agacttcaccggcagccgcatcaagatttgaataatcaattcatgaggaagatacggca 7774332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 7771114 - 7770985
Alignment:
Q  52 tgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 151  Q
    ||||||||||||||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||| | ||||| ||    
T  7771114 tgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatca 7771015  T
Q  152 gaatttgaactatcaattcatgatgcagat 181  Q
    ||||||| | ||| | ||||||| ||||||    
T  7771014 gaatttggattattagttcatgaggcagat 7770985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 48170928 - 48171129
Alignment:
Q  26 tacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcg---gagataagagaaaaccaagacttacaaacgcatttgaaacg 122  Q
    ||||||||||||||  ||| || |  |||||||| ||||||||||| || |||||    |||||||||| |||||||||||||||||| |||||||||||    
T  48170928 tacgagtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacg 48171027  T
Q  123 aataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcggcaatggaatcgtcttcttctccatgcgcctttttcca 222  Q
     | |||||| ||||||| || |||||||||||||||||||||||||||| ||  |||||  ||   |||| | |||||||||| |||||| |||||| ||    
T  48171028 tagaagagacttcaccgataacctcagcagaatttgaactatcaattcaagagccagataaggtggtggatttgtcttcttcttcatgcgtcttttttca 48171127  T
Q  223 at 224  Q
    ||    
T  48171128 at 48171129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 48156795 - 48156914
Alignment:
Q  52 tgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 151  Q
    |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||| ||  |  |    
T  48156795 tgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaa 48156894  T
Q  152 gaatttgaactatcaattca 171  Q
    | ||||||| ||||||||||    
T  48156895 ggatttgaattatcaattca 48156914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 49041508 - 49041591
Alignment:
Q  54 aaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcac 137  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||    
T  49041508 aaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 48891119 - 48891014
Alignment:
Q  52 tgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 151  Q
    |||||||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| || |||| || ||||| ||    
T  48891119 tgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctcaaca 48891020  T
Q  152 gaattt 157  Q
     |||||    
T  48891019 taattt 48891014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 33134169 - 33134323
Alignment:
Q  30 agtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcg---gagataagagaaaaccaagacttacaaacgcatttgaaacgaata 126  Q
    ||||||||||| ||| || |  |||||||||||||||||||| || |||||    |||||||||||||| |||| |||||||||||||||||||||||||    
T  33134169 agtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttgaaacgaata 33134268  T
Q  127 agagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagat 181  Q
    ||||| ||||||||||  |||| ||||||  | |  |||||||||||| ||||||    
T  33134269 agagacttcaccggtaatctcaacagaataaggatgatcaattcatgaggcagat 33134323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 7904755 - 7904657
Alignment:
Q  39 tgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcac 137  Q
    |||||| ||||| |||||||||||||||||||| || ||||| |||||||||||||||||  |||||||||| ||||||||||| |||||||| |||||    
T  7904755 tgcggcggtgagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 7877453 - 7877344
Alignment:
Q  29 gagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataag 128  Q
    ||||||| |||| ||  ||||| |||||||||||||||||||||| |||||| |||||||||||||||||   |||||||| |||||||||||| |||||    
T  7877453 gagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataag 7877354  T
Q  129 agaattcacc 138  Q
    ||| ||||||    
T  7877353 agacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 50668780 - 50668624
Alignment:
Q  25 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaa 124  Q
    ||||||||||||| | |||| || || | |||||| ||||| ||||||| | |||||||||| |||||||||||||| ||||||||||| |||||||| |    
T  50668780 ctacgagtgtgtgattcggcagtaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgta 50668681  T
Q  125 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagat 181  Q
    ||||| | ||||| || | ||||| || ||||||||  |||||||| | ||||||||    
T  50668680 taagatatttcacgggcaacctcaccaaaatttgaatgatcaattcgtaatgcagat 50668624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 7238091 - 7238194
Alignment:
Q  55 aaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaa 154  Q
    ||||||||||||||||| || || || ||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||| || | ||||| |||||    
T  7238091 aaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaa 7238190  T
Q  155 tttg 158  Q
    ||||    
T  7238191 tttg 7238194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 45366559 - 45366711
Alignment:
Q  25 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcg---gagataagagaaaaccaagacttacaaacgcatttgaaac 121  Q
    |||||||||||| ||||||| |  || |||||||||||||||||||| || | |||    |||||||||||||||||| ||||||||||||| |||||||    
T  45366559 ctacgagtgtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaac 45366658  T
Q  122 gaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatga 174  Q
    | |||||||| ||||| |||| ||| || || ||||| |  ||||||||||||    
T  45366659 gtataagagacttcactggtaaccttagtaggatttggatcatcaattcatga 45366711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 48898435 - 48898299
Alignment:
Q  52 tgaaaatgtgaatttgcaaaatggggatcg---gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctca 148  Q
    |||||||||||||||||||| |||| |||    |||||||| || ||||||||||||||||| || ||||||||  ||||||| ||||| ||||| ||||    
T  48898435 tgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggtagactca 48898336  T
Q  149 gcagaatttgaactatcaattcatgatgcagatgcgg 185  Q
    ||||||||||||  | |||||||||| | ||||||||    
T  48898335 gcagaatttgaatgaccaattcatgaggaagatgcgg 48898299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 52 - 205
Target Start/End: Complemental strand, 7908035 - 7907882
Alignment:
Q  52 tgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 151  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||  | ||||||||  ||||||| |||||||| | |||||| |    
T  7908035 tgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagta 7907936  T
Q  152 gaatttgaactatcaattcatgatgcagatgcggcaatggaatcgtcttcttct 205  Q
    | || || |  |||||||||||| | |||| ||||| ||   ||||||||||||    
T  7907935 ggatctggaaaatcaattcatgaggaagatacggcagtgtcgtcgtcttcttct 7907882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 48148027 - 48148173
Alignment:
Q  29 gagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcg---gagataagagaaaaccaagacttacaaacgcatttgaaacgaat 125  Q
    |||||||| |||  || ||||| | ||||||||||||||| || || |||||    |||||||||||||||||||||||||| || ||||||||||||||    
T  48148027 gagtgtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaat 48148126  T
Q  126 aagagaattcaccggtagcctcagcagaatttgaactatcaattcat 172  Q
    |||||| ||||| |||| |||    || |||||||||||||||||||    
T  48148127 aagagacttcactggtaaccttgaaaggatttgaactatcaattcat 48148173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 7822706 - 7822591
Alignment:
Q  25 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaa 124  Q
    |||||||| |||||||| |  ||||  ||||| |||||||||||||| |||||||| ||||||||||||||||| || |||||||| || |||||||| |    
T  7822706 ctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgta 7822607  T
Q  125 taagagaattcaccgg 140  Q
    ||||| | ||||||||    
T  7822606 taagatacttcaccgg 7822591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 21 - 183
Target Start/End: Complemental strand, 7813221 - 7813059
Alignment:
Q  21 aatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaa 120  Q
    |||||||||||| |||||||| |  ||||  ||||| ||||| |||||||| ||||| || ||||||||||||||||| || |||||||| || ||||||    
T  7813221 aatcctacgagtatgtgttgcagtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaa 7813122  T
Q  121 cgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgc 183  Q
    || |||||| | |||||||| | ||||| ||  ||| | | |||||| |||||| ||||||||    
T  7813121 cgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcagatgc 7813059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 45385158 - 45385290
Alignment:
Q  55 aaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaa 154  Q
    |||||||||| |||||| |||| ||||||||  |||||||||||||||||||||||| |||||||||| || ||||| || || |||| ||| || || |    
T  45385158 aaatgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtagga 45385257  T
Q  155 tttgaactatcaattcatgatgcagatgcggca 187  Q
    |||| |  |||||||||| | ||| ||||||||    
T  45385258 tttggatcatcaattcattaggcatatgcggca 45385290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 319 - 412
Target Start/End: Complemental strand, 48875331 - 48875230
Alignment:
Q  319 atttatgaatcatttttgcaaggcatgtctcttattt--------agggttagtctttttaacacaatgaaatgaaataaaacgacgcattggtttttgt 410  Q
    |||||||||||||||| |||||||| |||||||||||        |||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  48875331 atttatgaatcattttcgcaaggcacgtctcttatttttatttttagggtttgcctttttaacacaatgaaatgaaataaaacgacggattcgtttttgt 48875232  T
Q  411 ac 412  Q
    ||    
T  48875231 ac 48875230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 33133772 - 33133575
Alignment:
Q  30 agtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcg---gagataagagaaaaccaagacttacaaacgcatttgaaacgaata 126  Q
    ||||||||||| ||| || |  |||||||| ||||||||||| ||  ||||    ||||||||||||||||||  |||||||| | ||||||||||||||    
T  33133772 agtgtgtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaaagcttacaaatgaatttgaaacgaata 33133673  T
Q  127 agagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcggcaatggaatcgtcttcttctccatgcgcctttttccaat 224  Q
    ||||| ||||  |||| ||| ||||||||  | |  |||||||||||| |||||| |     |||| || ||||||||| ||||||||||||||||||    
T  33133672 agagacttcattggtaaccttagcagaataaggatgatcaattcatgaggcagatacaattgtggattcatcttcttcttcatgcgcctttttccaat 33133575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 7800374 - 7800216
Alignment:
Q  25 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaa 124  Q
    |||||||| |||||||| |  ||||  ||||| ||||||||||||||  ||||||| |||| |||||||||||| || |||||||| || |||||||| |    
T  7800374 ctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgta 7800275  T
Q  125 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgc 183  Q
    ||||| | |||||||| | ||||| ||  ||| | | |||||| |||||| ||||||||    
T  7800274 taagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcagatgc 7800216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 48902627 - 48902525
Alignment:
Q  85 ataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgcg 184  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| | || | ||| |||||| |  |||||||||||| | |||| ||    
T  48902627 ataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgaggtagatacg 48902528  T
Q  185 gca 187  Q
    |||    
T  48902527 gca 48902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 48852312 - 48852262
Alignment:
Q  133 ttcaccggtagcctcagcagaatttgaactatcaattcatgatgcagatgc 183  Q
    |||||||||| |||||||||||| |||||||||||||||||| ||||||||    
T  48852312 ttcaccggtaacctcagcagaatctgaactatcaattcatgaggcagatgc 48852262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 7765328 - 7765223
Alignment:
Q  55 aaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaa 154  Q
    ||||||||||||||||| || ||||| ||||||| |||||||||  ||||||||| ||| ||||||   |  ||||| |||||||||| ||||| |||||    
T  7765328 aaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaa 7765229  T
Q  155 tttgaa 160  Q
     |||||    
T  7765228 attgaa 7765223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 7786150 - 7786045
Alignment:
Q  55 aaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaa 154  Q
    ||||||||||||||||| || ||||| ||||||| ||||| |||   ||||||||||||||||||    |||||||| |||||||| | ||||| ||||     
T  7786150 aaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccggcaacctcaacagag 7786051  T
Q  155 tttgaa 160  Q
    ||||||    
T  7786050 tttgaa 7786045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 37827318 - 37827447
Alignment:
Q  8 gtgagatgaagagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttaca 107  Q
    |||| ||||| ||||| | |||||| |||| || ||| || || |||||||||||||||||||| | |||||  || |||||||  ||||| ||||||||    
T  37827318 gtgatatgaacagaattcgacgagtttgtgctgtggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttaca 37827417  T
Q  108 aacgcatttgaaacgaataagagaattcac 137  Q
    ||||||| | ||||  |||||||| |||||    
T  37827418 aacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 48882625 - 48882577
Alignment:
Q  382 atgaaataaaacgacgcattggtttttgtacccaaaaaataaaggcaaaa 431  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  48882625 atgaaataaaacgacgcattggttttggta-ccaaaaaataaaggcaaaa 48882577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 49044599 - 49044700
Alignment:
Q  54 aaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcaga 153  Q
    |||||||||||||||||| ||||  |  |||||||||||||||||  |||||||||| || |||||||| | ||||||  |||| || | ||||||||||    
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcaga 49044698  T
Q  154 at 155  Q
    ||    
T  49044699 at 49044700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 47207642 - 47207554
Alignment:
Q  54 aaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 142  Q
    |||||||||||| | |||||| || |||||||| |||||||| |||||||| ||||| |  || ||||| |||||||| ||||||||||    
T  47207642 aaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgtataagagacttcaccggta 47207554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 50251176 - 50251234
Alignment:
Q  52 tgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaac 110  Q
    ||||||||  |||||||| | |||||||| |||||||||||||||||||||||| ||||    
T  50251176 tgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaac 50251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 48852413 - 48852316
Alignment:
Q  9 tgagatgaagagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcg---gagataagagaaaaccaagact 103  Q
    ||||| ||| ||||| |||||||||||||||| ||| || |  | |||||| ||||||||||| || |||| |   ||||||||||||||||||||||    
T  48852413 tgagacgaatagaattctacgagtgtgtgttgaggcagtaatttcaaaatgcgaatttgcaaagtgaggattgtgagagataagagaaaaccaagact 48852316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 49048977 - 49049046
Alignment:
Q  62 aatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagaga 131  Q
    |||||||||||||||  |  |||||||||||||||||  |||||||||| || |||||||| | ||||||    
T  49048977 aatttgcaaaatgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagaga 49049046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 473 - 882
Target Start/End: Complemental strand, 38820327 - 38819896
Alignment:
Q  473 atattccaaaaggatcatattttcatgtgggccgtaatgtcgtgaagtcctctttccgcttatgatttccaagagaaggactccgaaact---------- 562  Q
    ||||||||||||| |||||||||||||||||||||||| | ||||||| ||||||||| ||||||||| ||||||||||||||| |||||              
T  38820327 atattccaaaaggttcatattttcatgtgggccgtaatattgtgaagttctctttccgtttatgatttgcaagagaaggactccaaaactataaacatca 38820228  T
Q  563 ----tcggtgagtatatgccttttctgacataatcgggaggcacatacccacaacaaaaggcaatacatgtggttagagtcatccaaggaacaacg---- 654  Q
        |||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||| |||||        
T  38820227 tacttcggggagtatatgccttttctgacatactcgggaggcacgtacccactataaaaggcaatacacgtggttagagtcatccaaggagcaacgataa 38820128  T
Q  655 ----tcattgattaaaatttacttactaagcacccacaatcctgcttgtatttgcttcaagttcatacttctcaaaaagtttagccatactaaaatctga 750  Q
        | ||| |||||||||||||||||| |  ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| |    
T  38820127 cacattattaattaaaatttacttactacgttcccacgatcctgcttgtatttacttcaagttcatacttctcaaaaagtttagccataccgaaatctaa 38820028  T
Q  751 tatctttggattcatctcatggtctaacaaaacattactagctttaatatctcggtggattatagtaaaacttgagtactcttggagataaagaaggcct 850  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||||||||||    
T  38820027 tatctttggattcatcgcatggtctaacaaaacattactagctttaacatctcggtggactatagtaaaatttgagtactcttagagataaagaaggcct 38819928  T
Q  851 tgagtaatttcttcaatgatattcacacgctt 882  Q
    | ||||||  ||||||||| ||||||||||||    
T  38819927 tcagtaatcccttcaatgacattcacacgctt 38819896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 15348599 - 15348450
Alignment:
Q  25 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaa 124  Q
    |||||||||||||||||||| || |  ||||||||||||||||| || |  ||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  15348599 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 15348500  T
Q  125 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatga 174  Q
    ||||||| |||||||||| ||||   |||||||||||||| |||||||||    
T  15348499 taagagacttcaccggtaacctctctagaatttgaactattaattcatga 15348450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 12195006 - 12194903
Alignment:
Q  57 atgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatt 156  Q
    ||||||||||||||| || ||||| ||||||||||| ||||| |||||||||| |||||||||||  | |||||| |||||||| | ||||||||| |||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatt 12194907  T
Q  157 tgaa 160  Q
    ||||    
T  12194906 tgaa 12194903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 12200008 - 12199909
Alignment:
Q  61 gaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaa 160  Q
    ||||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||||  | |||||| |||||||| | ||||||||| |||||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12199909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 12439434 - 12439331
Alignment:
Q  57 atgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatt 156  Q
    ||||||||||||||| || ||||| ||||||||||| ||||| |||||||||| |||||||||||  | |||||| |||||||| | ||||||||| |||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatt 12439335  T
Q  157 tgaa 160  Q
    ||||    
T  12439334 tgaa 12439331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 12444436 - 12444337
Alignment:
Q  61 gaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaa 160  Q
    ||||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||||  | |||||| |||||||| | ||||||||| |||||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12444337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 183
Target Start/End: Original strand, 4032284 - 4032415
Alignment:
Q  52 tgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 151  Q
    |||||||| ||||||||||| || ||||| || |||||||  |||||||| |||||||| || |||||||| |||||||| ||||  ||||| ||||| |    
T  4032284 tgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttcattggtagtctcagta 4032383  T
Q  152 gaatttgaactatcaattcatgatgcagatgc 183  Q
      ||||| |  |||||||||||| ||| ||||    
T  4032384 agatttggatgatcaattcatgaggcatatgc 4032415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 24309926 - 24309797
Alignment:
Q  13 atgaagagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgc 112  Q
    ||||||||||| ||||| ||||||||||  |  || || |||||||||||||||||||| || | ||| |||||||||||||||||  |||||||||||     
T  24309926 atgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacgg 24309827  T
Q  113 atttgaaacgaataagagaattcaccggta 142  Q
    ||||||||||||||||||| || |||||||    
T  24309826 atttgaaacgaataagagacttaaccggta 24309797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 24322171 - 24322086
Alignment:
Q  53 gaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcacc 138  Q
    |||| ||||||||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24322171 gaaactgtgaatttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcacc 24322086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 24340161 - 24340034
Alignment:
Q  15 gaagagaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcat 114  Q
    ||||||||| ||| ||||||||||||| || || |  ||||| |||||||||||||| ||   ||| |||||||| |||||||| |||||||||||  ||    
T  24340161 gaagagaattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagat 24340062  T
Q  115 ttgaaacgaataagagaattcaccggta 142  Q
    ||||||||||||||||| || |||||||    
T  24340061 ttgaaacgaataagagacttaaccggta 24340034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 24415571 - 24415457
Alignment:
Q  27 acgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaata 126  Q
    ||||||||||||||| || || |  ||||| |||||||||||||||  || ||  || |||||||||||||||||||||| |||||||||||||||||||    
T  24415571 acgagtgtgtgttgcagcagtaatctgaaactgtgaatttgcaaaactgg-atttgaaataagagaaaaccaagacttacgaacgcatttgaaacgaata 24415473  T
Q  127 agagaattcaccggta 142  Q
    ||||| || |||||||    
T  24415472 agagacttaaccggta 24415457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 24366865 - 24366787
Alignment:
Q  52 tgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagag 130  Q
    ||||| |||||||||||||| |  ||||  ||||||||||||||||| ||||| ||||| |||||||||||||| ||||    
T  24366865 tgaaactgtgaatttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagag 24366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 12005 - 11893
Alignment:
Q  19 agaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttga 118  Q
    ||||||||||||||||||||||  |  || || |||||||||||||||||||| ||   ||| ||||||||||||||||| |||||||||||| ||||||    
T  12005 agaatcctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttga 11906  T
Q  119 aacgaataagaga 131  Q
    |||| ||||||||    
T  11905 aacggataagaga 11893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 42562729 - 42562789
Alignment:
Q  82 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 142  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42562729 gagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 42562789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 29712804 - 29712927
Alignment:
Q  19 agaatcctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttga 118  Q
    ||||| ||| ||| |||||||  ||| || || ||||||||||||||||| ||||  |  |  |||||||||||||||||  ||||||||||||| ||||    
T  29712804 agaattctaggagcgtgtgttttggcggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttga 29712903  T
Q  119 aacgaataagagaattcaccggta 142  Q
    ||||||||||||| ||||||||||    
T  29712904 aacgaataagagacttcaccggta 29712927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 29695883 - 29695783
Alignment:
Q  31 gtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagag 130  Q
    |||||||| ||||  || || |||||||||||||||||||| || || |  || |||||||| |||||  ||||||||||||||||||||||||||||||    
T  29695883 gtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagag 29695784  T
Q  131 a 131  Q
    |    
T  29695783 a 29695783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 178738 - 178650
Alignment:
Q  46 gtgagatgaaaatgtgaatttgcaaaatggggatc---ggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagaga 131  Q
    ||||| |||||||| |||  ||||||||||| |||   |||||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  178738 gtgagttgaaaatgggaaagtgcaaaatgggtatcattggagatgagagataaccaagacttacaaacacatttgaaacgaataagaga 178650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 1812135 - 1812021
Alignment:
Q  52 tgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 151  Q
    ||||||||  |||||||||| |||||||  |||||||||||||||||  |||||||||| |||||| |||| || ||| | ||||| |||| ||||| ||    
T  1812135 tgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacctcaaca 1812036  T
Q  152 gaatttgaactatca 166  Q
     ||||||||| ||||    
T  1812035 aaatttgaacgatca 1812021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 29687761 - 29687642
Alignment:
Q  52 tgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagca 151  Q
    |||||||| ||||||||||| || || |  || || ||||||||||||||||||||||| || ||||| || |||||||| ||||| |||| | | || |    
T  29687761 tgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaa 29687662  T
Q  152 gaatttgaactatcaattca 171  Q
    | |||||||  |||||||||    
T  29687661 ggatttgaatgatcaattca 29687642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 21979989 - 21980082
Alignment:
Q  29 gagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacg 122  Q
    |||||||||||||||| |  |||| |||||||||||| ||||| | |||||  ||||| ||||||||||||||||||||||| || ||||||||    
T  21979989 gagtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacg 21980082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 11015918 - 11016022
Alignment:
Q  77 gatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatg 176  Q
    |||| ||||||||||  ||| | ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||  ||||| | ||||||||||||| |    
T  11015918 gatcagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtattatcaattcatgagg 11016017  T
Q  177 cagat 181  Q
    |||||    
T  11016018 cagat 11016022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 11024930 - 11025027
Alignment:
Q  77 gatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatga 174  Q
    |||| ||||||||||  ||||| ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||  ||||| |  ||||||||||||    
T  11024930 gatcagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtatgatcaattcatga 11025027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 11006332 - 11006459
Alignment:
Q  54 aaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcaga 153  Q
    |||||| || |||||||| || ||||| ||||||||||  ||||| ||||||||||| || |||||||| ||||| || |||||||| | ||||| ||      
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 11006431  T
Q  154 atttgaactatcaattcatgatgcagat 181  Q
    ||||| |  |||||||||||| ||||||    
T  11006432 atttgtatgatcaattcatgaggcagat 11006459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 47452277 - 47452363
Alignment:
Q  54 aaaatgtgaatttgcaaaatggggatcggagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccgg 140  Q
    ||||||||  ||||||||  | ||||| ||||||||||||||||| |||||| ||| ||| ||||| || | |||||| ||||||||    
T  47452277 aaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccgg 47452363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University