View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_high_13 (Length: 407)
Name: NF3415_high_13
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 41335319 - 41335696
Alignment:
| Q |
18 |
gaagatagaactatagagctgcttcaatttcttgagcccaatcctaaatcagaaacgcttcgaaataacattgtatcttacattaagggcctcatcatca |
117 |
Q |
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| T |
41335319 |
gaagatagaactatagagctgcttcaatttcttgagcccaatcctaaatcagaaacgcttcgaaataacattgtatcttacattaagggcctcatcatca |
41335418 |
T |
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| Q |
118 |
gccatgtccctgtcaaggtacgtaaaatctgcttcattttctactcattaattatttatcagtgtagttatagttatgaaatccttgtgttgcaccccaa |
217 |
Q |
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| T |
41335419 |
gccatgtccctgtcaaggtacgtaaaatctgcttcattttctactcattaattatatatcagtgtagttatagttatgaaatccttgtgttgcaccccaa |
41335518 |
T |
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| Q |
218 |
tattcattattttttagttaccgaaaatatctcgagcctttcattaatgtatgtattttgaaaggcatttagatttcatcatagttatgatttacgtact |
317 |
Q |
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| T |
41335519 |
tattcattattttttagttaccgaaaatatctcgagcctttcattaatgtatgtattttg-aagccatatagatttcatcatagttatgatttacgtact |
41335617 |
T |
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| Q |
318 |
a---aactgtgtttggcatgcatgttattgacattaaaacttgactgttttataannnnnnnaataagagatccatgtt |
393 |
Q |
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| T |
41335618 |
acttaactgtgtttggcatgcatgttattgacattaaaacttgactgttttataattcttttaataagagatccatgtt |
41335696 |
T |
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