View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3415_high_19 (Length: 344)
Name: NF3415_high_19
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 303
Target Start/End: Complemental strand, 7019443 - 7019149
Alignment:
| Q |
9 |
acgttggaatgccagtttccatggtttcttttggtgtttctatcgtacaatgacaatcggttgaagcacattggactgtattatacatatggcaagaagg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7019443 |
acgttggaatgccagtttccatggtttcttttggtgtttctatcgtacaatgacaatcggttgaagcacattggactgtattatacatatggcaagaagg |
7019344 |
T |
|
| Q |
109 |
ccacatattgttgtaggacacattagcctgccgcaattttttgtgttttggtagtaatgtagaagccaagcaacatgtcttaattatttcttaatcaaag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7019343 |
ccacatattgttgtaggacacattagcctaccgcaatttttcgtgttttggtagtaatgtagaagccaagcaacatgtcttaattatttcttaatcaaag |
7019244 |
T |
|
| Q |
209 |
gtgttatttatttggaatccaactcttgagttcataacaaaaagagggtaaacattaaaacgaggaaaaagatgaagaaagtgaagatgaagagg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7019243 |
gtgttatttatttggaatccaactcttgagttcataacaaaaagagggtaaacattaaaacgaggaaaaagatgaagaaagtgaagatgaagagg |
7019149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 199 - 303
Target Start/End: Complemental strand, 7023552 - 7023448
Alignment:
| Q |
199 |
ttaatcaaaggtgttatttatttggaatccaactcttgagttcataacaaaaagagggtaaacattaaaacgaggaaaaagatgaagaaagtgaagatga |
298 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||| |||| ||||| || |||||||||||| |||| |||||| |||||||||||||||||||||| |
|
|
| T |
7023552 |
ttaatcaaaagtattatttctttggaatccaactcttgggttcctaacagaaggagggtaaacataaaaaggaggaagaagatgaagaaagtgaagatga |
7023453 |
T |
|
| Q |
299 |
agagg |
303 |
Q |
| |
|
||||| |
|
|
| T |
7023452 |
agagg |
7023448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 303
Target Start/End: Complemental strand, 11125202 - 11125091
Alignment:
| Q |
192 |
ttatttcttaatcaaaggtgttatttatttggaatccaactcttgagttcataacaaaaagagggtaaacattaaaacgaggaaaaagatgaagaaagtg |
291 |
Q |
| |
|
||||||||| |||||| ||||||||| ||||||||||||||||| |||| ||||| |||| ||||| ||| |||||||||| ||||||||||| |
|
|
| T |
11125202 |
ttatttctttatcaaaagtgttatttcattggaatccaactcttgggttcctaacaggaagatagtaaaagaagaaaggaggaaaaagttgaagaaagtg |
11125103 |
T |
|
| Q |
292 |
aagatgaagagg |
303 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11125102 |
aagatgaagagg |
11125091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University