View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3415_high_20 (Length: 329)

Name: NF3415_high_20
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3415_high_20
NF3415_high_20
[»] chr5 (13 HSPs)
chr5 (1-316)||(36150523-36150839)
chr5 (1-96)||(13932822-13932917)
chr5 (3-104)||(36150996-36151097)
chr5 (7-109)||(17990741-17990843)
chr5 (40-100)||(20399041-20399101)
chr5 (3-82)||(22843767-22843846)
chr5 (14-107)||(17990996-17991088)
chr5 (7-79)||(22843898-22843969)
chr5 (133-199)||(788270-788336)
chr5 (129-198)||(36868347-36868416)
chr5 (131-194)||(19215439-19215502)
chr5 (129-199)||(32278701-32278771)
chr5 (3-70)||(9637753-9637817)
[»] chr7 (24 HSPs)
chr7 (129-315)||(26449415-26449601)
chr7 (3-104)||(32047236-32047337)
chr7 (1-104)||(25658390-25658493)
chr7 (5-96)||(26073410-26073501)
chr7 (5-96)||(26097197-26097288)
chr7 (1-96)||(35316105-35316200)
chr7 (1-81)||(35315868-35315948)
chr7 (25-96)||(7511090-7511161)
chr7 (12-104)||(36642610-36642702)
chr7 (1-104)||(26073146-26073249)
chr7 (2-96)||(5964232-5964326)
chr7 (3-104)||(26096933-26097034)
chr7 (1-96)||(33189893-33189988)
chr7 (1-72)||(33190144-33190215)
chr7 (31-96)||(21297724-21297789)
chr7 (15-95)||(47334-47414)
chr7 (2-82)||(32056651-32056730)
chr7 (129-167)||(19407870-19407908)
chr7 (3-96)||(42709905-42709998)
chr7 (7-82)||(5964014-5964090)
chr7 (12-99)||(32056866-32056953)
chr7 (27-81)||(24556349-24556403)
chr7 (11-64)||(6080052-6080105)
chr7 (1-73)||(527452-527524)
[»] chr8 (21 HSPs)
chr8 (3-104)||(23488960-23489061)
chr8 (1-96)||(5074514-5074609)
chr8 (3-96)||(16997104-16997197)
chr8 (1-72)||(23488848-23488919)
chr8 (12-104)||(41480780-41480872)
chr8 (12-107)||(38225706-38225801)
chr8 (3-82)||(42950606-42950685)
chr8 (1-82)||(7905658-7905739)
chr8 (3-104)||(34153475-34153575)
chr8 (1-82)||(38225457-38225538)
chr8 (3-103)||(42027208-42027308)
chr8 (3-104)||(5074255-5074355)
chr8 (5-104)||(23488590-23488689)
chr8 (1-96)||(42950352-42950447)
chr8 (5-82)||(11732618-11732695)
chr8 (3-72)||(11732860-11732929)
chr8 (129-198)||(27786783-27786852)
chr8 (124-166)||(36206448-36206490)
chr8 (30-104)||(42026946-42027020)
chr8 (30-95)||(16997292-16997357)
chr8 (131-199)||(29369160-29369228)
[»] chr1 (22 HSPs)
chr1 (129-266)||(49491809-49491945)
chr1 (3-95)||(27133831-27133923)
chr1 (1-96)||(49784532-49784625)
chr1 (2-111)||(2464050-2464159)
chr1 (1-66)||(4066923-4066988)
chr1 (1-104)||(4067142-4067243)
chr1 (3-97)||(34535299-34535393)
chr1 (31-104)||(49784816-49784889)
chr1 (132-262)||(50903410-50903544)
chr1 (1-64)||(27134115-27134178)
chr1 (1-96)||(34535557-34535652)
chr1 (45-104)||(38208524-38208583)
chr1 (18-80)||(2464189-2464251)
chr1 (1-96)||(23329307-23329402)
chr1 (3-104)||(20993857-20993958)
chr1 (1-82)||(38208281-38208362)
chr1 (129-195)||(41035024-41035090)
chr1 (3-96)||(7481186-7481279)
chr1 (12-80)||(33321309-33321377)
chr1 (129-195)||(3374358-3374424)
chr1 (128-166)||(14344109-14344147)
chr1 (7-96)||(7481046-7481134)
[»] scaffold0024 (2 HSPs)
scaffold0024 (1-95)||(70825-70919)
scaffold0024 (1-81)||(70614-70694)
[»] chr4 (17 HSPs)
chr4 (4-109)||(51103362-51103467)
chr4 (1-104)||(35251648-35251751)
chr4 (3-96)||(51103629-51103722)
chr4 (12-109)||(4892383-4892480)
chr4 (31-104)||(35004475-35004548)
chr4 (3-104)||(39864093-39864194)
chr4 (1-85)||(4892646-4892730)
chr4 (11-95)||(35251397-35251481)
chr4 (129-199)||(24239838-24239908)
chr4 (129-167)||(37050056-37050094)
chr4 (5-82)||(4872571-4872648)
chr4 (27-96)||(40681720-40681789)
chr4 (56-104)||(5808245-5808293)
chr4 (1-104)||(22886420-22886526)
chr4 (1-104)||(22938084-22938190)
chr4 (3-96)||(45302334-45302427)
chr4 (7-80)||(54511581-54511654)
[»] chr3 (24 HSPs)
chr3 (3-104)||(46164083-46164184)
chr3 (1-104)||(33140539-33140642)
chr3 (1-92)||(46163834-46163925)
chr3 (3-104)||(36012678-36012779)
chr3 (5-110)||(26121948-26122053)
chr3 (3-72)||(32808183-32808252)
chr3 (3-96)||(55213976-55214069)
chr3 (1-104)||(43804150-43804253)
chr3 (1-104)||(32808415-32808520)
chr3 (129-198)||(16893132-16893201)
chr3 (3-70)||(2051504-2051571)
chr3 (1-109)||(45708440-45708546)
chr3 (1-95)||(26244173-26244267)
chr3 (1-95)||(26244870-26244964)
chr3 (3-104)||(45708705-45708806)
chr3 (5-93)||(7565744-7565832)
chr3 (7-81)||(43031390-43031464)
chr3 (3-96)||(39840647-39840740)
chr3 (1-92)||(3157676-3157767)
chr3 (5-72)||(7565626-7565692)
chr3 (129-172)||(51524922-51524965)
chr3 (3-96)||(48338299-48338392)
chr3 (28-80)||(12089016-12089068)
chr3 (12-92)||(33140291-33140371)
[»] chr2 (15 HSPs)
chr2 (1-104)||(29469518-29469621)
chr2 (12-104)||(36937507-36937597)
chr2 (3-96)||(36937767-36937860)
chr2 (13-104)||(26407676-26407767)
chr2 (1-92)||(26407416-26407507)
chr2 (129-199)||(14296253-14296323)
chr2 (129-195)||(18811704-18811770)
chr2 (129-198)||(8413813-8413882)
chr2 (129-166)||(31092371-31092408)
chr2 (1-64)||(18143971-18144034)
chr2 (4-71)||(29166738-29166805)
chr2 (1-82)||(29166967-29167048)
chr2 (3-95)||(25961093-25961185)
chr2 (129-197)||(37344674-37344742)
chr2 (31-82)||(30786444-30786495)
[»] chr6 (14 HSPs)
chr6 (1-104)||(67342-67445)
chr6 (7-95)||(30122812-30122900)
chr6 (2-82)||(6714521-6714601)
chr6 (28-96)||(6169382-6169450)
chr6 (1-104)||(67602-67705)
chr6 (3-82)||(10388243-10388322)
chr6 (1-96)||(16434815-16434909)
chr6 (5-95)||(10388487-10388577)
chr6 (129-199)||(25167898-25167968)
chr6 (32-106)||(3687625-3687699)
chr6 (1-64)||(3687855-3687918)
chr6 (129-199)||(4263364-4263434)
chr6 (45-94)||(3605243-3605292)
chr6 (132-168)||(10990082-10990118)
[»] scaffold0022 (1 HSPs)
scaffold0022 (12-104)||(122548-122640)
[»] scaffold0081 (1 HSPs)
scaffold0081 (31-95)||(8705-8769)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 36150839 - 36150523
Alignment:
Q  1 tctgagaaacatttgacaaa-gacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtg 99  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  36150839 tctgagaaacatttgacaaaagacatgaaccattttgagttattcatagagttagggaccaatttgagaatttagtacatagatagggaccaatttggtg 36150740  T
Q  100 atttaatcgatatcaaatttcaatttagtcggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 199  Q
    ||||| | ||||||||||||||| | || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||    
T  36150739 atttacttgatatcaaatttcaactcagccggaatgaggactcgtgcccaaaaggatacctccaaagctacctcggcatataccaaatagttggctcaat 36150640  T
Q  200 ggtaaaacaatacatgggaagtgttatttgtaacatattgttcagacaacaagacctgttctatgatactaatgattgaactttggtgtttagctagtag 299  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36150639 ggtaaaacaatacatgggaagtgttatttgcaacacattgttcagacaacaagacctgttctatgatactgatgattgaactttggtgtttagctagtag 36150540  T
Q  300 cttctgtcatttctctg 316  Q
    |||||||||||||||||    
T  36150539 cttctgtcatttctctg 36150523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 13932822 - 13932917
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||  | | |||||||||||||||||||||| |||||||||||||||    
T  13932822 tctgagaaacgtttgacaaagacattgaccattttgagttattaatagagtcgagaatcaatttgagaatttagtacaaaaatagggaccaatttg 13932917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 36150996 - 36151097
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    |||||||| |||||||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| | | |||||||| ||||||||    
T  36150996 tgagaaacgtttgacaaagacagagaccattttgagttattcatagagttaggaaccaatttgagaatttggtacaaatacaaggaccaatatggtgatt 36151095  T
Q  103 ta 104  Q
    ||    
T  36151096 ta 36151097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 17990843 - 17990741
Alignment:
Q  7 aaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatttaat 106  Q
    |||| ||||||||| |||  ||||||||||||||||| ||||||||||||||||| ||||||||||  ||| |||| |  ||||||||||||| |||| |    
T  17990843 aaacttttgacaaaaacaaagaccattttgagttattaatagagtcagggaccaaattgagaatttgatacgaagacaatgaccaatttggtggtttact 17990744  T
Q  107 cga 109  Q
    |||    
T  17990743 cga 17990741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 20399041 - 20399101
Alignment:
Q  40 tattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtga 100  Q
    |||| |||||||||||||| ||||||||||| |  ||||||||||||||||||||||||||    
T  20399041 tattaatagagtcagggactaatttgagaatgtcttacaaagatagggaccaatttggtga 20399101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 22843846 - 22843767
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    ||||||| ||||||||||||||  ||||||||||| ||||| ||||| | ||||||||| |||| ||||| |||||||||    
T  22843846 tgagaaatatttgacaaagacagagaccattttgaattattaatagaatgagggaccaaattgaaaatttggtacaaaga 22843767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 17990996 - 17991088
Alignment:
Q  14 tgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatttaatc 107  Q
    ||||||||||| |||||  |||||| |||| ||||||||| | ||||| ||||||||||| |||||||| || ||||||||| ||| |||||||    
T  17990996 tgacaaagacaatgaccgctttgagctattaatagagtcaag-accaaattgagaatttaatacaaagagagagaccaatttagtggtttaatc 17991088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 22843898 - 22843969
Alignment:
Q  7 aaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaa 79  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||| |  ||| |||||||||||| ||||||    
T  22843898 aaacatttgacaaagacatggaccattttaagttattaatagagtc-gaaaccgatttgagaatttggtacaa 22843969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 788336 - 788270
Alignment:
Q  133 atgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 199  Q
    |||||||||||||||||||||||| ||||||||||  ||| | ||||||  ||||| ||||||||||    
T  788336 atgaggactcgtgcccaaaagggttcctccaaagccgccttgacatatatagaataattggttcaat 788270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 36868347 - 36868416
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaa 198  Q
    |||||||||| | |||| |||||||||| ||||||||||||||| | || ||||  ||||||||||||||    
T  36868347 cggaatgagggcccgtgtccaaaagggttcctccaaagctaccttgacagatacataatagttggttcaa 36868416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 19215439 - 19215502
Alignment:
Q  131 gaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggt 194  Q
    |||||||||| || |||||||||||||||| |||| || ||| |||| |||| |||||||||||    
T  19215439 gaatgaggacccgagcccaaaagggtaccttcaaaactgccttggcagatacagaatagttggt 19215502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 32278771 - 32278701
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 199  Q
    |||||||| || |||| ||||||||||||||||||||||  ||| | || |||| ||||||| ||||||||    
T  32278771 cggaatgaagattcgttcccaaaagggtacctccaaagccgccttgacagatacagaatagtgggttcaat 32278701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 9637753 - 9637817
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaat 70  Q
    |||||||| |||||||||||||||||||||||| |   | | ||||||| |||||| |||||||||||    
T  9637753 tgagaaacttttgacaaagacattgaccattttaa---aataatagagttagggactaatttgagaat 9637817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 129 - 315
Target Start/End: Complemental strand, 26449601 - 26449415
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaatggtaaaacaatacatgggaagtgttattt 228  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  26449601 cggaatgaggactcgtgtccaaaagggtacctccaaaactgcctcgacatataccaaatagttggttcaatggtaaaacaatacatggaaagtgttattt 26449502  T
Q  229 gtaacatattgttcagacaacaagacctgttctatgatactaatgattgaactttggtgtttagctagtagcttctgtcatttctct 315  Q
    |||||| ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  26449501 gtaacacattgttctgacaacaagacctgttctatgatactgatgattgaacttgggtgtttagctagtagcttctgtcatttctct 26449415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 32047337 - 32047236
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    |||||||  |||||||||||||  ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  32047337 tgagaaaagtttgacaaagacagagaccattttgagttattaatagagtcagagaccaatttgagaatttggtacaaagatagggaccaatttggtgatt 32047238  T
Q  103 ta 104  Q
    ||    
T  32047237 ta 32047236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 25658493 - 25658390
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtga 100  Q
    ||||| |||| ||||||||| ||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| |||||  |||    
T  25658493 tctgataaacgtttgacaaaaacaatgaccattttgagttattaacagagtcagggaccaatttgagaatttggtacaaagatagggactaatttactga 25658394  T
Q  101 ttta 104  Q
    ||||    
T  25658393 ttta 25658390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 26073410 - 26073501
Alignment:
Q  5 agaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    ||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||| |||| ||||| ||||||||| || ||||||||||    
T  26073410 agaaacatttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaatttg 26073501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 26097197 - 26097288
Alignment:
Q  5 agaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    ||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||| |||| ||||| ||||||||| || ||||||||||    
T  26097197 agaaacatttgacaaagacagagaccattttgaattattaatagagtcagggaccaaattgaaaatttggtacaaagacagtgaccaatttg 26097288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 35316105 - 35316200
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||||| ||||| |||||||  ||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| || ||| ||||||    
T  35316105 tctgagaaacgtttgagaaagacagggaccattttgagttattaatagagtcagggaccaatttaagaatttggtacaaagacagagactaatttg 35316200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 35315948 - 35315868
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaag 81  Q
    ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| | |||| ||||| ||||||||    
T  35315948 tctgagaaacatttgacaaagacatagactattttgagttattaatagagtcagggaccgaattgacaatttggtacaaag 35315868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 7511161 - 7511090
Alignment:
Q  25 ttgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    ||||||||||||||||||| | |||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  7511161 ttgaccattttgagttattaacagagtcattgaccaatttgagaatttggtacaaagatagggaccaatttg 7511090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 36642702 - 36642610
Alignment:
Q  12 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    |||||||||||||  ||  || |||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||  |||||||    
T  36642702 tttgacaaagacagagatgatgttgagttattaatagagtcagggaccaatttgaaaatttggtacaaagatagagaccaatttaatgattta 36642610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26073249 - 26073146
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtga 100  Q
    |||||||||| ||||||||||| | |||||||||||||||||| ||||||| || |  |||||||| ||||| ||||||||| | | ||||||||||||     
T  26073249 tctgagaaacgtttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttgaaaatttggtacaaagacatgaaccaatttggtgg 26073150  T
Q  101 ttta 104  Q
    ||||    
T  26073149 ttta 26073146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 5964232 - 5964326
Alignment:
Q  2 ctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    ||||||||| ||||| ||||||| |||||||||||||||||| | |||||| | |||||| |||||||||| ||| ||||||| ||| |||||||    
T  5964232 ctgagaaacgtttgataaagacagtgaccattttgagttattaaaagagtcggagaccaaattgagaatttggtataaagatatggatcaatttg 5964326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 26097034 - 26096933
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    |||||||| ||||||||||| | |||||||||||||||||| ||||||| || |  |||||||| ||||| ||||||||| | | |||||||||||| ||    
T  26097034 tgagaaacgtttgacaaagaaagtgaccattttgagttattaatagagttagaggtcaatttgaaaatttggtacaaagacatgaaccaatttggtggtt 26096935  T
Q  103 ta 104  Q
    ||    
T  26096934 ta 26096933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 33189988 - 33189893
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||||| ||||| |||||||   |||||||||||||||| |||||||||  |||||||||||||| || ||||||||| || ||||| ||||    
T  33189988 tctgagaaacttttgataaagacaaataccattttgagttattaatagagtcaaagaccaatttgagaagttggtacaaagacagagaccagtttg 33189893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 33190144 - 33190215
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaattt 72  Q
    |||||||||||||| |||||||||  ||||||||||| ||||| ||||||||||||| ||| |||| |||||    
T  33190144 tctgagaaacatttaacaaagacagagaccattttgaattattaatagagtcagggatcaaattgaaaattt 33190215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 21297789 - 21297724
Alignment:
Q  31 attttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    ||||||||||||| |||||||||| ||| || || ||||||| ||||||||| |||||||||||||    
T  21297789 attttgagttattaatagagtcagagactaaattaagaatttggtacaaagacagggaccaatttg 21297724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 47334 - 47414
Alignment:
Q  15 gacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 95  Q
    ||||||||||  || |||||||||||||| |||||| ||  ||||||||| | ||||| |||||||||||| |||||||||    
T  47334 gacaaagacagagatcattttgagttattaatagagacaaagaccaatttaataatttggtacaaagatagagaccaattt 47414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 32056730 - 32056651
Alignment:
Q  2 ctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    ||||||||  |||||||||||||  ||||||||| ||||||| ||||||| ||||||||| |||| ||||| |||||||||    
T  32056730 ctgagaaatgtttgacaaagacaaagaccattttaagttattaatagagt-agggaccaaattgaaaatttggtacaaaga 32056651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 19407908 - 19407870
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagc 167  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  19407908 cggaatgaggacccgtgcccaaaagggtacctccaaagc 19407870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 42709998 - 42709905
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||| |||||||||||||||||| ||||| |  |||| |||||||| | |||  ||||||||||    |||||||| |||||||||||||    
T  42709998 tgagaaacttttgacaaagacattgactattttaaaatattaatagagtcggagactgatttgagaatcacttacaaagacagggaccaatttg 42709905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 5964090 - 5964014
Alignment:
Q  7 aaacatttgacaaagacattgaccat-tttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    |||||||| ||| |||||  |||||| ||||||||||| |||||||||| ||| || |||||||||| |||||||||    
T  5964090 aaacatttaacagagacagggaccatgtttgagttattaatagagtcagagactaaattgagaatttggtacaaaga 5964014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 32056866 - 32056953
Alignment:
Q  12 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtg 99  Q
    |||||||||||||   |||||||| ||||||| ||| |||| |||||||| |||||||||| ||||| | | | | ||||||||||||    
T  32056866 tttgacaaagacagaaaccattttaagttattaataaagtccgggaccaaattgagaatttggtacagatacaagaaccaatttggtg 32056953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 24556349 - 24556403
Alignment:
Q  27 gaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaag 81  Q
    ||||||||| ||||||| |||||||||  |||||| |||| ||||||||||||||    
T  24556349 gaccattttaagttattaatagagtcaaagaccaaattgaaaatttagtacaaag 24556403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 6080052 - 6080105
Alignment:
Q  11 atttgacaaagacattgaccattttgagttattcatagagtcagggaccaattt 64  Q
    |||| |||||||||||||  ||||||||||||| | |||||||| |||||||||    
T  6080052 atttaacaaagacattgattattttgagttattaacagagtcagagaccaattt 6080105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 527524 - 527452
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaattta 73  Q
    ||||||||||||||||||||||||  ||| || |||| ||||| ||| || ||| ||||||||| | ||||||    
T  527524 tctgagaaacatttgacaaagacagagacaatcttgaattattaatatagacagagaccaatttaataattta 527452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 23488960 - 23489061
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||| |||||||||||||    
T  23488960 tgagaaacatttgacaaagacaatgaccattttgagttattcatagagtcatggaccaatttgagaatttggtacaaagacaaggatcaatttggtgatt 23489059  T
Q  103 ta 104  Q
    ||    
T  23489060 ta 23489061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 5074514 - 5074609
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    ||||| ||||||||||||||||||  ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| ||| |||||||    
T  5074514 tctgaaaaacatttgacaaagacagggaccattttgagttattaatagagacagggaccaatttgagaatttggtacaaagatatggatcaatttg 5074609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 16997197 - 16997104
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||| ||| ||||| |||| ||||| |||||||||||||||||||||||    
T  16997197 tgagaaacatttgacaaagacaaagaccattttgagttattaatagagttaggaaccaaattgataatttggtacaaagatagggaccaatttg 16997104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 23488848 - 23488919
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaattt 72  Q
    ||||||||| ||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||    
T  23488848 tctgagaaatatttgacaaagacagagaccattttgaattattcatagagtcagggaccaatttgagaattt 23488919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 41480780 - 41480872
Alignment:
Q  12 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    ||||||||||||| | |||||||||||||||| ||| ||||||||| |||| ||||||||| |||||||||||||||| || ||| |||||||    
T  41480780 tttgacaaagacagtaaccattttgagttattaataaagtcagggaacaatatgagaatttggtacaaagatagggactaaattgatgattta 41480872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 38225706 - 38225801
Alignment:
Q  12 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatttaatc 107  Q
    ||||||||||||||  |||||||| | ||||| |||||||||||||||||||||| ||||| ||| |||||  ||||||||||| ||| |||||||    
T  38225706 tttgacaaagacatgaaccattttaaattattaatagagtcagggaccaatttgataatttggtataaagactgggaccaatttcgtggtttaatc 38225801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 42950606 - 42950685
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    |||||||  ||||||||||||| |||||||||||||||||| |||||||||| |||| |||| | |||||| ||||||||    
T  42950606 tgagaaatgtttgacaaagacaatgaccattttgagttattaatagagtcagagacctatttaaaaatttaatacaaaga 42950685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 7905739 - 7905658
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    ||||| |||| ||||| |||||||  || |||||||||||||| |||||||||||||| ||||||| ||||| |||||||||    
T  7905739 tctgaaaaacgtttgataaagacagagatcattttgagttattaatagagtcagggactaatttgaaaatttggtacaaaga 7905658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 34153475 - 34153575
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    |||||||| ||||||||||||||  | |||||||||||||| |||||||||  ||||||||||| ||||| ||||||| | || || |||||||||| ||    
T  34153475 tgagaaacgtttgacaaagacata-atcattttgagttattaatagagtcatagaccaatttgataatttggtacaaaaacagtgatcaatttggtggtt 34153573  T
Q  103 ta 104  Q
    ||    
T  34153574 ta 34153575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38225538 - 38225457
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    ||||| ||| |||||||||| ||   ||||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||    
T  38225538 tctgaaaaatatttgacaaataccaagaccattttgagttattaatagagtaagggaccaaattgagaatttggtacaaaga 38225457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 42027208 - 42027308
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    ||||||| ||||||||||||||   |||||||| ||||||| |||||||||| ||||||||| ||||||| ||| ||||| |  ||| ||||| ||||||    
T  42027208 tgagaaagatttgacaaagacaagaaccattttaagttattaatagagtcagagaccaatttaagaattttgtataaagacaatgactaatttagtgatt 42027307  T
Q  103 t 103  Q
    |    
T  42027308 t 42027308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 5074355 - 5074255
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    ||||||||||||||||||||||  ||  ||||||||||||||||||||| | |||||||||| | |||||  ||||||||| | || |||||| ||| ||    
T  5074355 tgagaaacatttgacaaagacagagattattttgagttattcatagagtta-ggaccaatttaaaaatttgatacaaagatggagatcaatttagtgttt 5074257  T
Q  103 ta 104  Q
    ||    
T  5074256 ta 5074255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 23488689 - 23488590
Alignment:
Q  5 agaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    ||||||||||||||||| ||   |||||||||||||||||||||| |||| ||  |||| || ||||| ||| ||||| || |||| ||||||| |||||    
T  23488689 agaaacatttgacaaagtcaggaaccattttgagttattcatagaatcagtgattaattagaaaatttggtagaaagacagagacccatttggtaattta 23488590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 42950447 - 42950352
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    ||||||||||||||||||| | ||| || |||||||||||||| ||| ||| ||||| ||| |||| |||||  |||||||| | | |||||||||    
T  42950447 tctgagaaacatttgacaacggcatagatcattttgagttattaataaagttagggatcaaattgaaaatttgatacaaagacaagaaccaatttg 42950352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 11732695 - 11732618
Alignment:
Q  5 agaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    ||||||| || |||| ||||  ||||||||||| ||||| |||||||||| |||||| |||| ||||| |||||||||    
T  11732695 agaaacacttcacaatgacagagaccattttgaattattaatagagtcagtgaccaaattgaaaatttggtacaaaga 11732618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 11732860 - 11732929
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaattt 72  Q
    ||||||||| |||| ||||||| || |||||||||||||||  ||||||||||||| ||| ||| |||||    
T  11732860 tgagaaacacttgataaagacaatggccattttgagttattactagagtcagggactaatatgataattt 11732929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 27786852 - 27786783
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaa 198  Q
    |||||||||||  ||||||||||| ||| ||||||||||||||| | || ||||  ||||||||||||||    
T  27786852 cggaatgaggagccgtgcccaaaatggttcctccaaagctaccttgacagatacaaaatagttggttcaa 27786783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 36206490 - 36206448
Alignment:
Q  124 ttagtcggaatgaggactcgtgcccaaaagggtacctccaaag 166  Q
    |||||||||||||||||||||||| ||||| || |||||||||    
T  36206490 ttagtcggaatgaggactcgtgcctaaaagagttcctccaaag 36206448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 42027020 - 42026946
Alignment:
Q  30 cattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    |||||||||||||| ||| |||| ||||||||||| | ||||| ||| ||||| |  || |||||||||||||||    
T  42027020 cattttgagttattaataaagtcggggaccaatttaaaaatttggtaaaaagacaatgatcaatttggtgattta 42026946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 16997292 - 16997357
Alignment:
Q  30 cattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 95  Q
    ||||| || ||||| |||||||  ||||||  |||||||||||||||||| |||| ||||||||||    
T  16997292 catttggaattattaatagagttggggacctgtttgagaatttagtacaatgatatggaccaattt 16997357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 29369160 - 29369228
Alignment:
Q  131 gaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 199  Q
    |||||||||| ||||||||||||| ||| |||||| |  ||| |||| |||| ||||||||||| ||||    
T  29369160 gaatgaggacccgtgcccaaaaggatacatccaaatccgccttggcagatacagaatagttggtccaat 29369228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 49491945 - 49491809
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaatggtaaaacaatacatgggaagtgttattt 228  Q
    |||||||||||| ||||||||||||||||||||||||| | ||| ||| |||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  49491945 cggaatgaggacccgtgcccaaaagggtacctccaaagttgccttggcgtataccgaatagttggttcaattgtaaaa-gatacatgggaagtgttattt 49491847  T
Q  229 gtaacatattgttcagacaacaagacctgttctatgat 266  Q
    | ||||| |||||| | ||||||||  |||||| ||||    
T  49491846 gcaacatcttgttctggcaacaagatatgttctttgat 49491809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 27133923 - 27133831
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 95  Q
    |||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||| |||||| ||||||| ||||||||| ||||||||||||    
T  27133923 tgagaaacgtttgacaaagacatagaccattttgagttattaataaagtcagggatcaatttaagaatttggtacaaagacagggaccaattt 27133831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 49784625 - 49784532
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    ||||||||||| |||||||||||||  |||||||||||||||| |||||||||||||| || |||| ||||||||||||||| |||||| ||||||    
T  49784625 tctgagaaacacttgacaaagacat--accattttgagttattaatagagtcagggactaaattgaaaatttagtacaaagacagggactaatttg 49784532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 2464159 - 2464050
Alignment:
Q  2 ctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgat 101  Q
    ||||||||| ||||||||||||||    |||||||||||||| || ||||| |||||||| || | ||||||||||||||||| ||||||||||| || |    
T  2464159 ctgagaaacgtttgacaaagacatgagtcattttgagttattaatggagtctgggaccaaattaaaaatttagtacaaagatatggaccaatttgatggt 2464060  T
Q  102 ttaatcgata 111  Q
    ||| ||||||    
T  2464059 ttactcgata 2464050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4066988 - 4066923
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttga 66  Q
    |||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  4066988 tctgagaaacttttgacaaagacagtgaccattttgaattattaatagagtcagggaccaatttga 4066923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4067142 - 4067243
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtga 100  Q
    ||||||||||||||||||||||| | ||||||||||||||||| |||||||||  ||||||||| | ||||| |||||||||  |||| ||||||| |||    
T  4067142 tctgagaaacatttgacaaagacgt-gaccattttgagttattaatagagtcaatgaccaatttaaaaatttggtacaaaga-ggggatcaatttgatga 4067239  T
Q  101 ttta 104  Q
    ||||    
T  4067240 ttta 4067243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 34535393 - 34535299
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttgg 97  Q
    |||||||| |||||||||  || |||||||||| ||||||| ||||||||| |||| ||||||| ||||| ||||||| | ||||||||||||||    
T  34535393 tgagaaacgtttgacaaattcagtgaccattttaagttattaatagagtcaaggactaatttgaaaatttggtacaaaaacagggaccaatttgg 34535299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 49784816 - 49784889
Alignment:
Q  31 attttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    ||||||||||||| |||||||||||||||||| |||||| || ||||||||| | |||||||||||||| ||||    
T  49784816 attttgagttattaatagagtcagggaccaatatgagaacttggtacaaagacatggaccaatttggtggttta 49784889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 262
Target Start/End: Complemental strand, 50903544 - 50903410
Alignment:
Q  132 aatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaatggtaaaacaatacat----gggaagtgttatt 227  Q
    ||||||||| ||||||||||  ||||||||||||||   || |||||||||||| |||||||||| || | || | |||| ||    |||||||||||||    
T  50903544 aatgaggacccgtgcccaaagcggtacctccaaagccgacttggcatataccgattagttggttccattgcaagagaatatatatatgggaagtgttatt 50903445  T
Q  228 tgtaacatattgttcagacaacaagacctgttcta 262  Q
    || ||||| |||||||| |||||||| ||||||||    
T  50903444 tgcaacatcttgttcaggcaacaagatctgttcta 50903410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27134115 - 27134178
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaattt 64  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||||||||  |||||||||    
T  27134115 tctgagaaacatttgacaaagacatgaaccattttgagttattaatagagtcaaagaccaattt 27134178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 34535557 - 34535652
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||||||| ||| ||||| |   | |||||||||||||| ||| ||||||||||||| |||| ||||||||||||| | |||||||||||||    
T  34535557 tctgagaaacatatgataaagataagaatcattttgagttattaataaagtcagggaccaaattgaaaatttagtacaaatagagggaccaatttg 34535652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 38208524 - 38208583
Alignment:
Q  45 atagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    |||||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||    
T  38208524 atagagtcagggaccaatttgagaatttggtacaaagacagagaccaatttggtggttta 38208583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 2464189 - 2464251
Alignment:
Q  18 aaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaa 80  Q
    ||||||| |||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  2464189 aaagacaatgactattttgagttattaatagagtcatggaccaatttgagaatttggtacaaa 2464251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 23329402 - 23329307
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||| ||| ||||||||| |||  |||||||| ||| |||| ||||||||||| ||||| ||||||||||  |||||||||| | |||||||||    
T  23329402 tctgagtaacgtttgacaaacacagagaccatttcgaggtattaatagagtcaggaaccaaattgagaatttgatacaaagataagaaccaatttg 23329307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 20993958 - 20993857
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    |||||||||||||||||||||    || ||||||||||||| ||||| ||| ||||||| ||||||||||  || ||| |||| || ||||||| |||||    
T  20993958 tgagaaacatttgacaaagacggaaactattttgagttattaatagaatcatggaccaagttgagaattttatataaaaatagagatcaatttgatgatt 20993859  T
Q  103 ta 104  Q
    ||    
T  20993858 ta 20993857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38208362 - 38208281
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    ||||||||| |||||||||||| ||  |||||||||||||||  |||||||||| |||||| || | ||||||||| |||||    
T  38208362 tctgagaaatatttgacaaagatataaaccattttgagttatcaatagagtcagagaccaaattaaaaatttagtataaaga 38208281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 41035090 - 41035024
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggtt 195  Q
    |||||||||||| ||||||||||| ||  ||||||||||||||| |||| || | ||||||||||||    
T  41035090 cggaatgaggacccgtgcccaaaaaggctcctccaaagctaccttggcaaattctgaatagttggtt 41035024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 7481186 - 7481279
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||| ||||||||||| |  ||||||||| ||||||| ||||||||   ||||| |||||||||||  |||||| | || ||||||||||    
T  7481186 tgagaaacgtttgacaaagatagagaccattttaagttattaatagagtcgaagaccagtttgagaatttgttacaaatacagagaccaatttg 7481279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 33321309 - 33321377
Alignment:
Q  12 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaa 80  Q
    |||||||||||| | ||| ||||||||||||| ||||||||||  |||||||| | ||||| |||||||    
T  33321309 tttgacaaagacgtggactattttgagttattaatagagtcagaaaccaatttaaaaatttggtacaaa 33321377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 3374358 - 3374424
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggtt 195  Q
    ||||||||||||  ||||||||||||||| |||||||||| ||| || |  ||| ||||||||||||    
T  3374358 cggaatgaggacatgtgcccaaaagggtagctccaaagctgccttggaagctacagaatagttggtt 3374424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 14344109 - 14344147
Alignment:
Q  128 tcggaatgaggactcgtgcccaaaagggtacctccaaag 166  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  14344109 tcggaatgatgactcgtgtccaaaagggtacctccaaag 14344147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 7481134 - 7481046
Alignment:
Q  7 aaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||| |||||||| |||| |||| ||||| | ||||| ||||||| ||| ||||| || ||||||| |||||||||||| ||| ||||||    
T  7481134 aaacgtttgacaatgacagtgacgattttaaattattaatagagttagg-accaaattaagaatttggtacaaagatagtgactaatttg 7481046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 70825 - 70919
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 95  Q
    |||||||||| |||||||||||||| |||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  70825 tctgagaaacgtttgacaaagacatggaccattttgagctattaatagagtcagagaccaatttgagaatttagtacaaagacagggaccaattt 70919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 70694 - 70614
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaag 81  Q
    |||||||||| |||||||||||||   | |||||| ||||||| ||| ||| ||||||||||||||||||| |||||||||    
T  70694 tctgagaaacgtttgacaaagacagaaatcattttaagttattaataaagtgagggaccaatttgagaattgagtacaaag 70614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 51103467 - 51103362
Alignment:
Q  4 gagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattt 103  Q
    ||||||| |||||||||| || |||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||| |||||||    
T  51103467 gagaaacttttgacaaaggcaatgaccattttgaattattaatagagtcagggaccaatttgagaatttggtacaaagacagagaccaatttagtgattt 51103368  T
Q  104 aatcga 109  Q
    | ||||    
T  51103367 actcga 51103362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 35251648 - 35251751
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtga 100  Q
    |||||||||||||||| |||||||  ||||||| | ||||||| ||||||| ||||||||| |||||||||| ||||||||| ||||||||||||||||     
T  35251648 tctgagaaacatttgagaaagacaaagaccattataagttattaatagagttagggaccaaattgagaatttggtacaaagacagggaccaatttggtgg 35251747  T
Q  101 ttta 104  Q
    ||||    
T  35251748 ttta 35251751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 51103629 - 51103722
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||  ||||| |||||||  ||| ||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  51103629 tgagaaatgtttgataaagacagagactattttgagttattaatagagtcagtgaccaatttgaaaatttggtacaaagatagggaccaatttg 51103722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 4892480 - 4892383
Alignment:
Q  12 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatttaatcga 109  Q
    ||||||||||||| | |||||||||||||||| |||||||| | ||| ||||| ||||||| ||||||||| || ||||||||||||| |||| ||||    
T  4892480 tttgacaaagacagtaaccattttgagttattaatagagtcggagactaatttaagaatttggtacaaagacagagaccaatttggtggtttactcga 4892383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 35004548 - 35004475
Alignment:
Q  31 attttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |||||  || |||||||||||    
T  35004548 attttgagttattaatagagtcagggaccaatatgagaatttggtacaaagacagggattaaattggtgattta 35004475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 39864194 - 39864093
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    |||||||  |||||||||||||  || |||||||||||||| |||||||| ||||||||||| | ||||| ||||||||| || |||||||||  |||||    
T  39864194 tgagaaaagtttgacaaagacagggatcattttgagttattaatagagtcggggaccaatttaaaaatttggtacaaagacagagaccaatttaatgatt 39864095  T
Q  103 ta 104  Q
    ||    
T  39864094 ta 39864093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 4892646 - 4892730
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatag 85  Q
    |||||||||||||| |||||||||  ||||||||||| || |  |||||||| |||||||| |||||||||| ||||||||||||    
T  4892646 tctgagaaacatttcacaaagacaaagaccattttgaattgtaaatagagtctgggaccaaattgagaatttggtacaaagatag 4892730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 35251481 - 35251397
Alignment:
Q  11 atttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 95  Q
    |||||||||||||||  |||||||||||||||| ||||| ||    |||||||| | |||||||||||||| |||||||||||||    
T  35251481 atttgacaaagacataaaccattttgagttattaatagaatcctaaaccaatttaaaaatttagtacaaaggtagggaccaattt 35251397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 24239908 - 24239838
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 199  Q
    |||||||||||| |||||||||||||||||||| ||||||| || |||| ||||  ||||||||| |||||    
T  24239908 cggaatgaggacccgtgcccaaaagggtacctcaaaagctatcttggcagatacataatagttggctcaat 24239838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 37050056 - 37050094
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagc 167  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37050056 cggaatgaggactcgtgcccaaaagggtacctccaaagc 37050094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 4872648 - 4872571
Alignment:
Q  5 agaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    |||||| |||||||||||||  || |||||||||||||| ||||||| || || |||||| ||||||| |||||||||    
T  4872648 agaaacgtttgacaaagacagagatcattttgagttattaatagagttagagatcaatttaagaatttggtacaaaga 4872571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 40681720 - 40681789
Alignment:
Q  27 gaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||  ||||||||| | | |||||||||    
T  40681720 gaccattttaagttattaatagaatcagggaccaatttgagaattcggtacaaagacatgaaccaatttg 40681789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 5808245 - 5808293
Alignment:
Q  56 gaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    ||||||||||||||||| |||||||||||||||||||||| || |||||    
T  5808245 gaccaatttgagaatttggtacaaagatagggaccaatttagtaattta 5808293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 22886526 - 22886420
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagt---tattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttgg 97  Q
    ||||||||||||||||||||||||   || |||||||||   |||| ||| ||||||| |||||||| ||||||| ||||||| | | | |||||||||     
T  22886526 tctgagaaacatttgacaaagacaagtactattttgagttattattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaatttga 22886427  T
Q  98 tgattta 104  Q
    |||||||    
T  22886426 tgattta 22886420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 22938190 - 22938084
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagt---tattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttgg 97  Q
    ||||||||||||||||||||||||   || |||||||||   |||| ||| ||||||| |||||||| ||||||| ||||||| | | | |||||||||     
T  22938190 tctgagaaacatttgacaaagacaagtactattttgagttattattaataaagtcaggaaccaatttaagaatttggtacaaatacatgaaccaatttga 22938091  T
Q  98 tgattta 104  Q
    |||||||    
T  22938090 tgattta 22938084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 45302427 - 45302334
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||||||| ||||||||| |||  ||||||| |||||  |||||||||||| ||| || |||||||  || ||||| ||||| |||||||    
T  45302427 tgagaaacatttcacaaagacagtgaatattttgaattattagtagagtcagggatcaaattaagaatttgatataaagagagggatcaatttg 45302334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 54511581 - 54511654
Alignment:
Q  7 aaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaa 80  Q
    |||| |||||| |||| || ||||||||||| ||||| ||||| ||  |||||||||| ||||||| |||||||    
T  54511581 aaacgtttgactaagatatagaccattttgaattattaatagattcgtggaccaatttaagaatttggtacaaa 54511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 46164083 - 46164184
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    |||||||| |||||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||||  |||||||| |||| ||||||||||| ||    
T  46164083 tgagaaacgtttgacaaagacagagaccattttgagttattaatagagtcagggactaatttgagaatttgatacaaagacagggtccaatttggtggtt 46164182  T
Q  103 ta 104  Q
    ||    
T  46164183 ta 46164184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 33140539 - 33140642
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtga 100  Q
    |||||||||  ||||||||||||| |||||||||||||||||| |||||||||| || ||||||||| |||| ||||||||| | |||||||||| ||||    
T  33140539 tctgagaaatgtttgacaaagacagtgaccattttgagttattaatagagtcagagatcaatttgagcatttggtacaaagacaaggaccaatttagtga 33140638  T
Q  101 ttta 104  Q
    ||||    
T  33140639 ttta 33140642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 46163925 - 46163834
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaa 92  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||||||||  ||||||| |||||||||| ||||||||| |||||||||    
T  46163925 tctgagaaacatttgacaaagacagggaccattttgagttattaatagagtcgcggaccaaattgagaatttggtacaaagacagggaccaa 46163834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 36012678 - 36012779
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    |||||||| ||||| |||||||  ||||||||||||||||| |||||||||| || |||||||| ||||| ||||||||| || ||||||||| ||||||    
T  36012678 tgagaaacgtttgaaaaagacagggaccattttgagttattaatagagtcagagatcaatttgataatttggtacaaagacagagaccaatttagtgatt 36012777  T
Q  103 ta 104  Q
    ||    
T  36012778 ta 36012779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 26122053 - 26121948
Alignment:
Q  5 agaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    ||||||||||||||||||||   ||||||||| |||||| ||||||||| |||||||||||||||||| ||| ||||| || ||||||| || | |||||    
T  26122053 agaaacatttgacaaagacagataccattttgtgttattaatagagtcatggaccaatttgagaatttggtataaagacagtgaccaatgtgataattta 26121954  T
Q  105 atcgat 110  Q
     |||||    
T  26121953 ctcgat 26121948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 32808252 - 32808183
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaattt 72  Q
    ||||||||||||||||||||||  || |||||||||||||| |||||||||||||||||||||| |||||    
T  32808252 tgagaaacatttgacaaagacagagatcattttgagttattaatagagtcagggaccaatttgaaaattt 32808183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 55214069 - 55213976
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||| ||||  |||||||||| ||||| ||||||||| || ||| ||||||    
T  55214069 tgagaaacgtttgacaaagaccttgaccattttgagttattaatagattcagataccaatttgaaaatttggtacaaagacagagactaatttg 55213976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 43804150 - 43804253
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtga 100  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||| ||| | |||||||||| | ||||| || |||||| |  |||||||||| |||    
T  43804150 tctgagaaacatttgacaaagacaatgaccattttgaattattaataaagttaaggaccaatttaaaaatttggtgcaaagacaaagaccaatttgatga 43804249  T
Q  101 ttta 104  Q
    ||||    
T  43804250 ttta 43804253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 32808415 - 32808520
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttat--tcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggt 98  Q
    |||||||||| ||||||||||| |  ||||||||||||||||  | |||||| || |||||||||||| | ||| ||||||||| || ||||||||||||    
T  32808415 tctgagaaacgtttgacaaagatagagaccattttgagttatcataatagagccaaggaccaatttgaaattttggtacaaagacagagaccaatttggt 32808514  T
Q  99 gattta 104  Q
    ||||||    
T  32808515 gattta 32808520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 16893132 - 16893201
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaa 198  Q
    |||||||||||| ||||| ||||||||| ||||||||||| ||| | |||||||||||||||||||||||    
T  16893132 cggaatgaggacccgtgctcaaaagggtgcctccaaagctgccttgccatataccgaatagttggttcaa 16893201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 2051571 - 2051504
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaat 70  Q
    |||||||| ||||||||||| |  ||||||||||||||||| | |||||||| |||||||||||||||    
T  2051571 tgagaaacgtttgacaaagataaggaccattttgagttattaacagagtcagagaccaatttgagaat 2051504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 45708546 - 45708440
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccatttt-gagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtg 99  Q
    |||||||||| ||||||||||||||  | |||||| |||||||| ||||||| || ||||||||| | ||||| ||||   |||| ||||||||||||||    
T  45708546 tctgagaaacgtttgacaaagacatgaatcatttttgagttattaatagagttagagaccaatttaaaaatttggtac---gataaggaccaatttggtg 45708450  T
Q  100 atttaatcga 109  Q
    ||||| ||||    
T  45708449 atttactcga 45708440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 26244267 - 26244173
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 95  Q
    ||||||||||||| ||||||||||  |||||||||| |||||| ||||||||| ||| |||||| | |||||  |||||||| ||  ||||||||    
T  26244267 tctgagaaacattggacaaagacagagaccattttgtgttattaatagagtcatggatcaatttaaaaatttgttacaaagacagtaaccaattt 26244173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 26244964 - 26244870
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 95  Q
    ||||| ||| ||||||||||||||  ||||||||||  ||||| ||||||||| |||||||||| | ||||| ||||||||| |  |||||||||    
T  26244964 tctgataaatatttgacaaagacagagaccattttgttttattaatagagtcatggaccaatttaaaaatttggtacaaagacactgaccaattt 26244870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 45708705 - 45708806
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatt 102  Q
    |||| ||| |||||||||||||  | ||||||||||||||| | | |||||| ||||||||| | | ||||||||||||| | ||||||||||  |||||    
T  45708705 tgaggaacgtttgacaaagacagaggccattttgagttattaacatagtcagtgaccaatttaaaattttagtacaaagacatggaccaatttaatgatt 45708804  T
Q  103 ta 104  Q
    ||    
T  45708805 ta 45708806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 7565744 - 7565832
Alignment:
Q  5 agaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaat 93  Q
    |||||| ||||||||||| || ||||||||||||||||| ||| ||||   |||||| |||||||||| ||||| |||||  |||||||    
T  7565744 agaaacgtttgacaaagagatggaccattttgagttattaataaagtcgtagaccaaattgagaatttggtacagagataaagaccaat 7565832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 43031390 - 43031464
Alignment:
Q  7 aaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaag 81  Q
    |||||||||||||||||| ||| |||||| ||||||| ||||| ||||  |||||||| |||||||  |||||||    
T  43031390 aaacatttgacaaagacaatgatcattttaagttattaatagaatcagaaaccaatttaagaatttgatacaaag 43031464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 39840740 - 39840647
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||| ||||||||| ||| |||| |||||||  |||| |||||||||| ||| |||||||||||    |||||||| ||||| |||||||    
T  39840740 tgagaaacttttgacaaaaacaatgactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaagacagggatcaatttg 39840647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3157767 - 3157676
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaa 92  Q
    |||||||||||||||||||||| |   |||||||| | ||||| ||||||| | |||| ||  ||||||||| ||||||||| | |||||||    
T  3157767 tctgagaaacatttgacaaagaaaagaaccattttaaattattaatagagttatggacgaaactgagaatttggtacaaagacaaggaccaa 3157676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 7565692 - 7565626
Alignment:
Q  5 agaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaattt 72  Q
    |||||| ||||||||||| |   | |||||||||||||| |||||||| |||||||||||||||||||    
T  7565692 agaaacgtttgacaaagatagatatcattttgagttattaatagagtc-gggaccaatttgagaattt 7565626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 51524922 - 51524965
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacct 172  Q
    |||||||||||| ||||||||||||||  |||||||||||||||    
T  51524922 cggaatgaggacccgtgcccaaaagggctcctccaaagctacct 51524965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 48338392 - 48338299
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||| |||||||||||||| ||| |||||||  |||| |||||||||  ||| ||||| |||||    ||||||||||| ||| ||||||    
T  48338392 tgagaaacttttgacaaagacatggactattttgaagtattaatagagtcaatgactaatttaagaatcatttacaaagatagagactaatttg 48338299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 12089068 - 12089016
Alignment:
Q  28 accattttgagttattcatagagtcagggaccaatttgagaatttagtacaaa 80  Q
    |||||||||| ||||| ||| |||||||||||||||| | ||||| |||||||    
T  12089068 accattttgaattattaataaagtcagggaccaatttaaaaatttggtacaaa 12089016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 33140371 - 33140291
Alignment:
Q  12 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaa 92  Q
    |||||||||||||   | |||||||||||||| ||||||||||  || ||||| |||||||  |||||||| | |||||||    
T  33140371 tttgacaaagacaaaaatcattttgagttattaatagagtcagaaactaatttaagaatttgatacaaagacatggaccaa 33140291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 29469621 - 29469518
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtga 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||| |||||||||  ||||||||||||||||| ||||||||  || ||||||||| | ||    
T  29469621 tctgagaaacatttgacaaagacagcgaccattttgagttattaatagagtcaatgaccaatttgagaatttggtacaaaggcagagaccaatttcgaga 29469522  T
Q  101 ttta 104  Q
    ||||    
T  29469521 ttta 29469518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 36937597 - 36937507
Alignment:
Q  12 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    |||||||||||||  |||||||  |||||||| |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  36937597 tttgacaaagacaaagaccatt--gagttattaatagagtcagagaccaatttgagaatttggtacaaagatagggactaatttggtggttta 36937507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 36937767 - 36937860
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||||||| |||||||||  ||||||||| ||||||| ||||||||| ||||||| |||||||||| ||||||||| | | |||||||||    
T  36937767 tgagaaacatttcacaaagacagagaccattttcagttattaatagagtcaaggaccaaattgagaatttggtacaaagacaagaaccaatttg 36937860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 26407676 - 26407767
Alignment:
Q  13 ttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    ||||||||||||  ||||||||||| ||||| |||||||||||||||||| ||| ||||| ||||||||| |||||| || ||| |||||||    
T  26407676 ttgacaaagacagggaccattttgaattattaatagagtcagggaccaatatgaaaatttggtacaaagacagggactaaattgatgattta 26407767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 26407507 - 26407416
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaa 92  Q
    |||||||||  |||||||||||||  ||||||||||||||||| |||||||| |  |||||||||| ||||| ||||||||| | |||||||    
T  26407507 tctgagaaaagtttgacaaagacagggaccattttgagttattaatagagtctgaaaccaatttgaaaatttggtacaaagacatggaccaa 26407416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 14296323 - 14296253
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 199  Q
    ||||||||| ||||||| |||||||||||||||||||| | ||| |||| ||||  |||||||||||||||    
T  14296323 cggaatgagcactcgtgtccaaaagggtacctccaaagatgccttggcagatacataatagttggttcaat 14296253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 18811770 - 18811704
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggtt 195  Q
    |||||||||||| ||||||||||||||  ||||||||||||||| | || |||| ||||||||||||    
T  18811770 cggaatgaggacccgtgcccaaaagggctcctccaaagctaccttgacagatacagaatagttggtt 18811704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 8413882 - 8413813
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaa 198  Q
    |||||||||||| ||||| |||||||||||||||||||||  |  | ||||||| |||||||||||||||    
T  8413882 cggaatgaggacccgtgctcaaaagggtacctccaaagctgtcctgccatatactgaatagttggttcaa 8413813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 31092371 - 31092408
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaag 166  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31092371 cggaatgaggactcgtgcccaaaagggtacctccaaag 31092408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 18143971 - 18144034
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaattt 64  Q
    ||||| |||| ||||||||| ||||  |||||||||||||||| |||||||||| |||||||||    
T  18143971 tctgataaacgtttgacaaaaacatgaaccattttgagttattaatagagtcagagaccaattt 18144034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 29166805 - 29166738
Alignment:
Q  4 gagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatt 71  Q
    ||||||||||| |||||||||  |||| |||||||||||| |||||||| |||||||| || ||||||    
T  29166805 gagaaacatttcacaaagacaaggaccgttttgagttattaatagagtcggggaccaaattaagaatt 29166738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 29166967 - 29167048
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    |||||||||| ||||||||| |||  ||||||||||||||||  |||||||| || || ||||||| |||||  ||||||||    
T  29166967 tctgagaaacgtttgacaaaaacagagaccattttgagttatcaatagagtccggtactaatttgaaaatttgttacaaaga 29167048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 25961185 - 25961093
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 95  Q
    |||||||| ||||| ||| |||  ||||||||| ||||||| ||||||||| |||  ||||| ||| |||| |||||||  ||||||||||||    
T  25961185 tgagaaacgtttgataaaaacagggaccattttaagttattaatagagtcatggataaatttaagattttaatacaaagtcagggaccaattt 25961093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 37344674 - 37344742
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttca 197  Q
    ||||||||||| ||||||||||||||||| |||||||||  ||| | |||||||  |||||||| ||||    
T  37344674 cggaatgaggattcgtgcccaaaagggtatctccaaagccgccttgacatatacataatagttgattca 37344742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 30786444 - 30786495
Alignment:
Q  31 attttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    ||||||||||||| ||||||||||||| |||||||| | ||| |||||||||    
T  30786444 attttgagttattaatagagtcagggatcaatttgaaagtttggtacaaaga 30786495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 67445 - 67342
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtga 100  Q
    |||||||||  ||||| ||| |||  ||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||| | |||||||||||||||    
T  67445 tctgagaaatgtttgataaaaacagggaccattttaagttattaatatagtcagggaccaatttgagaatttggtacaaagacatggaccaatttggtga 67346  T
Q  101 ttta 104  Q
    ||||    
T  67345 ttta 67342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 30122812 - 30122900
Alignment:
Q  7 aaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 95  Q
    ||||||||||||||||||  ||||||||||||||||| ||| ||| ||||||||||||||||||||  |||||||| ||| ||||||||    
T  30122812 aaacatttgacaaagacagagaccattttgagttattaataaagttagggaccaatttgagaatttgatacaaagacaggaaccaattt 30122900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 6714521 - 6714601
Alignment:
Q  2 ctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    |||||||| | ||||||||||||  ||||||||||| ||||| ||| |||||| ||||||||||||||||| |||||||||    
T  6714521 ctgagaaataattgacaaagacaaagaccattttgaattattaataaagtcagagaccaatttgagaatttggtacaaaga 6714601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 6169450 - 6169382
Alignment:
Q  28 accattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||||||||||| ||| |||||  |||||| |||||||||||||| |||||||| ||||||||||    
T  6169450 accattttgagttattaataaagtcattgaccaaattgagaatttagtataaagatagagaccaatttg 6169382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 67602 - 67705
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtga 100  Q
    ||||| |||| | ||||||||||   ||| ||||||||||||| ||| | |||| ||||||||||| ||||| |||||||||  |||||||||||| |||    
T  67602 tctgaaaaacgtatgacaaagacggagactattttgagttattaataaaatcagagaccaatttgaaaatttggtacaaagactgggaccaatttgatga 67701  T
Q  101 ttta 104  Q
    ||||    
T  67702 ttta 67705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 10388322 - 10388243
Alignment:
Q  3 tgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaaga 82  Q
    |||||||||||| |||||||||  ||||||||||||||||| |||||||||| ||||| ||| | ||||| ||| |||||    
T  10388322 tgagaaacatttaacaaagacagagaccattttgagttattaatagagtcagagaccagtttaaaaatttggtataaaga 10388243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 16434909 - 16434815
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttg 96  Q
    |||||||||  |||||||||||||   |||||||| ||||||| ||||||||| | |||||||||||||||| ||||||||| || ||| ||||||    
T  16434909 tctgagaaatttttgacaaagacagataccatttttagttattaatagagtcatg-accaatttgagaatttggtacaaagagagagactaatttg 16434815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 10388487 - 10388577
Alignment:
Q  5 agaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 95  Q
    |||||||| |||||||||||| || |||||||| ||||| ||||||| ||  |||||||||||||| | |||||||||  | |||||||||    
T  10388487 agaaacatctgacaaagacatggatcattttgatttattaatagagttagaaaccaatttgagaatatggtacaaagacggagaccaattt 10388577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 25167898 - 25167968
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 199  Q
    ||||| |||||||| ||||||||||||||||||||||||  ||| | || |||| ||||||||||||||||    
T  25167898 cggaaagaggactcatgcccaaaagggtacctccaaagccgccttgacagatacagaatagttggttcaat 25167968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 3687699 - 3687625
Alignment:
Q  32 ttttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgatttaat 106  Q
    |||||||||||| | ||||||| ||| ||||||||||||||  |||||||| || |||||||||  |||||||||    
T  3687699 ttttgagttattaacagagtcatggatcaatttgagaatttgatacaaagacagagaccaatttaatgatttaat 3687625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3687855 - 3687918
Alignment:
Q  1 tctgagaaacatttgacaaagacattgaccattttgagttattcatagagtcagggaccaattt 64  Q
    |||||||||| ||||||||| |||  ||||||||||||||| | ||| | ||||||||||||||    
T  3687855 tctgagaaacgtttgacaaaaacagagaccattttgagttactaataaactcagggaccaattt 3687918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 4263434 - 4263364
Alignment:
Q  129 cggaatgaggactcgtgcccaaaagggtacctccaaagctacctcggcatataccgaatagttggttcaat 199  Q
    |||||||||||| ||||| ||||||||| ||||||||  |  || |||| |||| ||||||||||||||||    
T  4263434 cggaatgaggacccgtgctcaaaagggttcctccaaaattgtcttggcagatacggaatagttggttcaat 4263364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 3605243 - 3605292
Alignment:
Q  45 atagagtcagggaccaatttgagaatttagtacaaagatagggaccaatt 94  Q
    |||||||||| ||||||||| | || |||||||||||| |||||||||||    
T  3605243 atagagtcagagaccaatttaaaaacttagtacaaagacagggaccaatt 3605292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 10990082 - 10990118
Alignment:
Q  132 aatgaggactcgtgcccaaaagggtacctccaaagct 168  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  10990082 aatgaggactcgtgcacaaaagggttcctccaaagct 10990118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 122548 - 122640
Alignment:
Q  12 tttgacaaagacattgaccattttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaatttggtgattta 104  Q
    |||||||||||||  ||| | |||||  |||| |||||||||| ||| |||||||||||||  |||||||| ||||||||| |||||| ||||    
T  122548 tttgacaaagacaaagactagtttgaaatattaatagagtcagagactaatttgagaatttcttacaaagacagggaccaacttggtgcttta 122640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 8705 - 8769
Alignment:
Q  31 attttgagttattcatagagtcagggaccaatttgagaatttagtacaaagatagggaccaattt 95  Q
    ||||||||||||| ||||||| |||| |||| ||||||| ||| || |||||||| |||||||||    
T  8705 attttgagttattaatagagttagggtccaaattgagaacttaatataaagatagagaccaattt 8769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University