View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_high_27 (Length: 296)
Name: NF3415_high_27
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 19890721 - 19890448
Alignment:
| Q |
1 |
agttgggaactgatgtaaacatcatctctagacttattaatctctatcaagagcnnnnnnntgatttgagtatacaaataaatttacattatgaaaactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |
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| T |
19890721 |
agttgggaactgatgtaaacatcatctctagacttattaatctctatcaagagcaaaaaaatgatttgagtatacaaacaaatttacattatgaaaattg |
19890622 |
T |
|
| Q |
101 |
cataagcataaaacgttatataccattattgttcactttaacatgagtctcaatatcagcatgttgtcccttgtttcnnnnnnnattcttttctccaatt |
200 |
Q |
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|| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
19890621 |
cagaagcataaaacgttatataccattattattcaatttaacatgagtctcaatatcagcatgttgtcccttatttctttttttattcttttctccaatt |
19890522 |
T |
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| Q |
201 |
ctagtctttttgtcctttacttactttcatcatgacaaaaattcaacatgtgaattaataccaacacaatacat |
274 |
Q |
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| T |
19890521 |
cttgtctttttgtcctttatttgctttcatcatgacaaaaattcaacctgtgaatcaatacaaacacaatacat |
19890448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 35573951 - 35574000
Alignment:
| Q |
206 |
ctttttgtcctttacttactttcatcatgacaaaaattcaacatgtgaat |
255 |
Q |
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| T |
35573951 |
ctttttttcccttactaactttcatcatggcaaaaattcaacctgtgaat |
35574000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 11493459 - 11493693
Alignment:
| Q |
1 |
agttgggaactgatgtaaacatcatctctagacttattaatctctatcaagagcnnnnnnntgatttgagtatacaaataaatttacattatgaaaactg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| || |
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| T |
11493459 |
agttgggaactgatgtaaacatcatctctagacttattaatctctatcaagagcaaaataatgatttgagtatacaaacaaatttacattataaaaattg |
11493558 |
T |
|
| Q |
101 |
cataagcataaaacgttatataccattattgttcactttaacatgagtctcaatatcagcatgttgtcccttgtttcnnnnnnnattcttttctccaat- |
199 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
11493559 |
cagaagcataaaacgttatataccattattgttcactttaacatgagtctcaatatcagcatgttgtcccttgtttctttttttattcttttctcaaatt |
11493658 |
T |
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| Q |
200 |
-tctagtctttttgtcctttacttactttcatcat |
233 |
Q |
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||| |||||||||||||||| ||||||||||||| |
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|
| T |
11493659 |
ctcttgtctttttgtcctttatttactttcatcat |
11493693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 273
Target Start/End: Original strand, 18596720 - 18596879
Alignment:
| Q |
116 |
ttatataccattattgttcactttaacatgagtctcaatatcagcatgttgtcccttgtttcnnnnnnnattcttttctccaattctagt--ctttttgt |
213 |
Q |
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||||||||||| |||||||||| ||||||| ||||||| |||||||| |||| || |||| | |||||||| ||||||| | |||||| | |
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| T |
18596720 |
ttatataccatcattgttcactgtaacatgtgtctcaacatcagcattttgttccatgttactctttttcttcttttccccaattcgtataacttttttt |
18596819 |
T |
|
| Q |
214 |
cctttacttactttcatcatgacaaaaattcaacatgtgaattaataccaacacaataca |
273 |
Q |
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|| |||||||||||| ||||||||||||||||| ||||||| || | ||||||||||| |
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|
| T |
18596820 |
cccttacttactttcgccatgacaaaaattcaacctgtgaatcaacataaacacaataca |
18596879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 8723547 - 8723503
Alignment:
| Q |
116 |
ttatataccattattgttcactttaacatgagtctcaatatcagc |
160 |
Q |
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||||||||||| |||||||||| ||||||| ||||||| |||||| |
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| T |
8723547 |
ttatataccatcattgttcactgtaacatgtgtctcaacatcagc |
8723503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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