View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_high_3 (Length: 616)
Name: NF3415_high_3
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 605
Target Start/End: Original strand, 55377062 - 55377667
Alignment:
| Q |
18 |
tgttattgactaagagagtagcatcctttgcaagctttgcagcagccttagcaagagtaagagcttcggaagcagcagcagctataacagcgtcttcact |
117 |
Q |
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| T |
55377062 |
tgttattgactaagagagtagcatcctttgcaagctttgcagcagccttagcaagagtaagagcttcggaagcagcagcagctataacagcgtcttcact |
55377161 |
T |
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| Q |
118 |
agtaagaagtgattctacagatgaggaggaggagtgtgcctgaata-----taatatagttagtttgtggttggaggcaatgcaaggaagtgaagggtga |
212 |
Q |
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| T |
55377162 |
agtaagaagtgattctacagatgaggaggaggagtgtgcctgaatataatataatatagttagtttgtggttggaggcaatgcaaggaagtgaagggtga |
55377261 |
T |
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| Q |
213 |
aactgaaattaagaaattgataaccttaattacctgagaggcatagggccaaggtggtgagttttcagattcagcaggagcaacatcaaatttgaaatca |
312 |
Q |
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| T |
55377262 |
aactgaaattaagaaattgataaccttaattacctgagaggcatagggccaaggtggtgagttttcagattcagcaggagcaacatcaaatttgaaatca |
55377361 |
T |
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| Q |
313 |
aggagtgccgttgaagaagacaaaatacagtgtcttgttgtagttgttttgggtgctgcatcaaaaagaaaagagtgaggtgagaaatgagnnnnnnnnn |
412 |
Q |
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| T |
55377362 |
aggagtgccgttgaagaagacaaaatacagtgtcttgttgtagttgttttgggtgctgcatcaaaaagaaaagagtgaggtgagaaatgagaatataata |
55377461 |
T |
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| Q |
413 |
nnnnnnnnnngagaattgtttatgcatacactgaagaagaaaga---------gatgatgatgatgatggcggtgggtagggatcctgatgaaagtgtct |
503 |
Q |
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| T |
55377462 |
taatataatagagaattgtttatgcatacactgaagaagaaagagatgatgatgatgatgatgatgatgccggtgggtagggattctgatgaaagtgtct |
55377561 |
T |
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| Q |
504 |
gggttgcagatgaattgtggcaataaacacgacgacgatgatgaccacattatcctttctccaaaaaataagagtt----accaactaactactaactaa |
599 |
Q |
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| T |
55377562 |
gggttgcagatgaattgtggcaataaacacgacgacgatgatgaccacattatcctttctccaaaaaataagagttactaactaactaactactaactaa |
55377661 |
T |
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| Q |
600 |
cttcat |
605 |
Q |
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| T |
55377662 |
cttcat |
55377667 |
T |
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