View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_high_30 (Length: 274)
Name: NF3415_high_30
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 39535930 - 39535680
Alignment:
| Q |
1 |
taataatttgaaacaatgacataattcagtcccagtaataacattctattcgttgaacaaaataatgcggcaaataaatggggnnnnnnnctcaaagttg |
100 |
Q |
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| T |
39535930 |
taataatttgaaacaatgacataattcagtcccagtaataacattctatgggttgaacaaaataatgcggcaaataaaaggg-aaaaaaactcaaagttg |
39535832 |
T |
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| Q |
101 |
gataaataatatctatctaactcaatacatcatgtgtttgcacgtgcaaccaaaatgagaatcaaataaaactccaactatatcatcatcattaattcat |
200 |
Q |
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| T |
39535831 |
gataaataatatcta----actcaatacatcatgtgtttgcacgtgaaaccaaaatgagaataaaataaaactccaactatatcatcatcattaattcat |
39535736 |
T |
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| Q |
201 |
aattatccatagcctaaaaagaaaatgtaaatagttccaatcctactaccagtacc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39535735 |
aattatccatagcctaaaaagaaaatgtaaatagttccaatcctactaccagtacc |
39535680 |
T |
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