View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_high_38 (Length: 248)
Name: NF3415_high_38
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 42309675 - 42309553
Alignment:
| Q |
16 |
atcataaactgcacaaagaaacagaggcaatgcaagatgaacatataaaattatattcctttctaaaagatagtcaaatacatcattacatccatgttca |
115 |
Q |
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| T |
42309675 |
atcataaactgcacaaagaaacagaggcaatgcaagatgaacatataaaattatattcctttctaaaagatagtcaaatacatcattacatccatgttca |
42309576 |
T |
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| Q |
116 |
gaaattcatattcatattcatat |
138 |
Q |
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||||||||||||||||||||||| |
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| T |
42309575 |
gaaattcatattcatattcatat |
42309553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 43200549 - 43200662
Alignment:
| Q |
119 |
attcatattcatattcatattcatgttgatgttagctgcttcccttaatttatatttaagtatttcacctcttaatagattgagttctgcttgtaaagat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43200549 |
attcatattcatattcatattcatgttgatgttagctgcttcccttaatttatatttaagtatttcacctcttaatagattgagttctgcttgtaaagat |
43200648 |
T |
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| Q |
219 |
tgaacctgttgttg |
232 |
Q |
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|||||||||||||| |
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| T |
43200649 |
tgaacctgttgttg |
43200662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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