View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3415_high_4 (Length: 546)

Name: NF3415_high_4
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3415_high_4
NF3415_high_4
[»] chr4 (4 HSPs)
chr4 (203-535)||(38038680-38039013)
chr4 (17-170)||(38038530-38038683)
chr4 (265-329)||(38025340-38025404)
chr4 (265-329)||(38030739-38030803)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 203 - 535
Target Start/End: Original strand, 38038680 - 38039013
Alignment:
Q  203 cttaattagaatctggttcgaacttactagcttattgcatttacatcattaagtgtttttagtattttgcaacaaacatgattttactagcttattgggt 302  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38038680 cttaactagaatctggttcgaacttactagcttattgcatttacatcattaagtgtttttagtattttgcaacaaacatcattttactagcttattgggt 38038779  T
Q  303 attatggtataaggtaccacttttttgatgtacaatataaaagag-aaatacagtaaaaagagactgactatgattaagcaattctgaaaactggggttt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38038780 attatggtataaggtaccacttttttgatgtacaatataaaagaggaaatacagtaaaaagagactaactatgattaagcaattctgaaaactggggttt 38038879  T
Q  402 atatcttgttgtagattcaccaatttttcttgcttatacaagcttaagcatatagtataaatgaatcatcatctaacggaactgctagtccttaagccaa 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38038880 atatcttgttgtagattcaccaatttttcttgcttatacaagcttaagcatatagtataaatgaatcatcatctaacggaactgctagtccttaagccaa 38038979  T
Q  502 ttctttgtatttgaggtgatgacaccacaggttc 535  Q
    ||||||||||||||||||||||||||||||||||    
T  38038980 ttctttgtatttgaggtgatgacaccacaggttc 38039013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 38038530 - 38038683
Alignment:
Q  17 tgttctgttctgttcttatgctgttaattgtgcaattgatacatgttgtttgaggaagtaaattcgaagtcggatacttgtatttcatgattattgacaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38038530 tgttctgttctgttcttatgctgttaattgtgcaattgatacatgctgtttgagggagtaaattcgaagtcggatacttgtatttcatgattattgacaa 38038629  T
Q  117 gaaatgaaattgaaaaagaggaatataaatggccctccaatgcatatgaactta 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38038630 gaaatgaaattgaaaaagaggaatataaatggccctccaatgcatatgaactta 38038683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 38025340 - 38025404
Alignment:
Q  265 tattttgcaacaaacatgattttactagcttattgggtattatggtataaggtaccacttttttg 329  Q
    ||||||||||| |||| ||||||||| ||||||||||| || |||| ||||||||||||||||||    
T  38025340 tattttgcaacgaacaagattttacttgcttattgggttttgtggtgtaaggtaccacttttttg 38025404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 38030739 - 38030803
Alignment:
Q  265 tattttgcaacaaacatgattttactagcttattgggtattatggtataaggtaccacttttttg 329  Q
    ||||||||||| |||| ||||||||| ||||||||||| || |||| ||||||||||||||||||    
T  38030739 tattttgcaacgaacaagattttacttgcttattgggttttgtggtgtaaggtaccacttttttg 38030803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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