View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_high_46 (Length: 234)
Name: NF3415_high_46
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 12497426 - 12497223
Alignment:
| Q |
15 |
atgaatggcgcgaaccaagatcaagatgataacaaaaactacacttgaaataatagaagttgaagatacaactaaagaagcagcagccattgcttctttc |
114 |
Q |
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| T |
12497426 |
atgaatggcgcgaaccaagatcaagatgacaacaaaaaagacagttgaaataatagaagttgaagatac-actaaagaagcagcagccattgcttctttc |
12497328 |
T |
|
| Q |
115 |
catcagagacagtttcaagtaggga----gctgctacacttacatcttcgccagaaaattctagagaaaatcaatgcaatggagcagaaatgattagttt |
210 |
Q |
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|||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12497327 |
catcagagacagtttcaagtggggactagggagctacacttacatcttcgccagaaaattctagaaaaaatcaatgcaatggagcagaaatgattagttt |
12497228 |
T |
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| Q |
211 |
catac |
215 |
Q |
| |
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||||| |
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| T |
12497227 |
catac |
12497223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 44671349 - 44671242
Alignment:
| Q |
25 |
cgaaccaagatcaagatgataacaaaaactacacttgaaataatagaagttgaagatacaactaaagaagcagcagccattgcttctttccatcagagac |
124 |
Q |
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||||||||||||||||||| ||||||| | |||||||||| | | | ||||||||| ||||| ||||||| |||||||||| | |||||||| ||| |
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| T |
44671349 |
cgaaccaagatcaagatgacaacaaaagccacacttgaaagggtggcaattgaagata-aactagagaagcaacagccattgcctttttccatcgaagat |
44671251 |
T |
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| Q |
125 |
agtttcaag |
133 |
Q |
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||||||||| |
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| T |
44671250 |
agtttcaag |
44671242 |
T |
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