View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_high_5 (Length: 521)
Name: NF3415_high_5
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 14 - 519
Target Start/End: Complemental strand, 41075656 - 41075147
Alignment:
| Q |
14 |
gataattagatatattttattagtagaagtgttggatgtataatcaacgcaagcagactctacccaccttctgttaacggttgcagtcttgcagccgacc |
113 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
41075656 |
gataattagagatattttattagtagaagtgttggatgtataatcaacgcaagcaaactctacccaccttctgttaagggttgcagtcttgcagacgacc |
41075557 |
T |
|
| Q |
114 |
tactctatcatgtgttagacaaccggataatcacaaaatacagttacagcagatctcaatgtcaaaactaagcacacaccaccagaaatccagaatacca |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41075556 |
tactctatcatgtgttagacaatcggataatcacaaaatacagttacagcagatctcaatgtcaaaactaagcacacaccaccagaaatccagaatacca |
41075457 |
T |
|
| Q |
214 |
actattggacctaactcctaacaagactcaagctgatactgaaactaagaatgagactaactatcataaagaaacacaggctagcaccccatctaaacaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
41075456 |
actattggacctaactcctaacaagactcaagctgatactgaaactaagaatgagactaactatcgtaaagaaacacaggctaacaccccatctaaacaa |
41075357 |
T |
|
| Q |
314 |
aatacacacataagtattc----caccacttagaccagacccttaagatagtccaaaaggaaccaggagaactctgatacactagcatcacctccatcgt |
409 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41075356 |
aatacacacataagtattcctttcaccacttagaccagacacttaagatagtccaaaaggaatcaggagaactctgatacactagcatcacctccatcgt |
41075257 |
T |
|
| Q |
410 |
gaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgccttcatggtaccaataacctt |
509 |
Q |
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| T |
41075256 |
gaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgcctttatggtaccaataacctt |
41075157 |
T |
|
| Q |
510 |
tgctactcct |
519 |
Q |
| |
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|| ||||||| |
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| T |
41075156 |
tgttactcct |
41075147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 110 - 501
Target Start/End: Complemental strand, 41087040 - 41086649
Alignment:
| Q |
110 |
gacctactctatcatgtgttagacaaccggataatcacaaaatacagttacagcagatctc--aatgtcaaaactaagcacacaccaccagaaatccaga |
207 |
Q |
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||||||| |||||||||||| ||||| |||| | ||| |||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41087040 |
gacctacactatcatgtgttggacaatcggaca---acacaataaaattacaatagatctcaaaatgtcaaaactaagcacacaccaccagaaatccaga |
41086944 |
T |
|
| Q |
208 |
ataccaactattggacctaactcctaacaagactcaagctgatactgaaactaagaatgagactaactatcataaagaaacacaggctagcaccccatct |
307 |
Q |
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| T |
41086943 |
ataccaaccaccggacctgactcctaacaagactcaagctgatactgaaactaagaatgagactaactatcataaagaaaaacaggctagcaccccaagt |
41086844 |
T |
|
| Q |
308 |
aaacaaaatacacacataagtattccaccacttagaccagacccttaagatagtcc-aaaaggaaccaggagaactctgatacactagcatcacctccat |
406 |
Q |
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||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
41086843 |
aaacaaaatacacacatcagtattccaccatttacaccagacccttacaatagtccaaaaaggaaccaggagaactctaatacactagcaacacctccat |
41086744 |
T |
|
| Q |
407 |
cgtgaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgccttcatggtacca |
501 |
Q |
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| T |
41086743 |
tatgaattcagaggaataggtacctcactcatgtatactcaaaaaaacaaccaatcaataaccggataccaatcaaatttgccttcatggtacca |
41086649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 309 - 491
Target Start/End: Complemental strand, 48297424 - 48297241
Alignment:
| Q |
309 |
aacaaaatacacacataagtattccaccacttagaccagacccttaagatagtccaa-aaggaaccaggagaactctgatacactagcatcacctccatc |
407 |
Q |
| |
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|||||||||||||||||||||||||||| |||| || ||||||||| ||| ||||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
48297424 |
aacaaaatacacacataagtattccaccgcttacactagacccttacgatggtccaggaaggaactaggagaactctaatacactagcatcacctccatc |
48297325 |
T |
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| Q |
408 |
gtgaattcaaaggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgcctt |
491 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||| |
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| T |
48297324 |
atgaattcataggaataggtacctcaatcatgtatactccaaaaaacagccaatcaataataggataccaatcaaattttcctt |
48297241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 48297514 - 48297462
Alignment:
| Q |
120 |
atcatgtgttagacaaccggataatcacaaaatacagttacagcagatctcaa |
172 |
Q |
| |
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|||||||||||||||| | || ||||| |||||||||||||| |||||||||| |
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| T |
48297514 |
atcatgtgttagacaatcagacaatcataaaatacagttacaacagatctcaa |
48297462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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