View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_high_9 (Length: 446)
Name: NF3415_high_9
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 1632021 - 1632290
Alignment:
| Q |
1 |
cttcctattcctaattttatgtctc--aaaattaatttataaggtcatataacaaagcccaaaattatgnnnnnnnattctaaaaacatcaggtttttct |
98 |
Q |
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| T |
1632021 |
cttcctatccctaattttatgtctctcaaaattaatttataaggtcatataacaaagcccaaaattatgtttttttattctaaaaacatcaggtttttct |
1632120 |
T |
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| Q |
99 |
aatttattaattgtatatcattttaaaattagtagaaacaaaatcctcacattaccattgatgcgtcgtttgagcaccataatcactaccattgttatac |
198 |
Q |
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| T |
1632121 |
aatttattaattgtatatcattttaaaattagtagaaacaaaatcctcacattaccattgatgcgtggtttgagcaccataatcactaccattgttatac |
1632220 |
T |
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| Q |
199 |
gggagaaaaatgagcaatggagttatacaaaattcatttttcttgaatttgttatatggtataacaaatt |
268 |
Q |
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| T |
1632221 |
gggagaaaaatgagcaatggagttatacaaaattcatttttcttgaatttgttatatggtataacaaatt |
1632290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 267 - 426
Target Start/End: Original strand, 1632542 - 1632700
Alignment:
| Q |
267 |
ttaaatctaatagaccattgaaaagaattcttttattaaatcgctagtagagttaattattagagtgtataagtagtgcaacaagttggtgagcaatgga |
366 |
Q |
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| T |
1632542 |
ttaaatctaatagaccattgaaaagaattcttttattacatcgctagtagagttaattattagagtgtata-gtagtgcaacaagttggtgagcaatgga |
1632640 |
T |
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| Q |
367 |
gttcgagagagagaatacaagagaaaattgatagaaagggaggaaggagaaggggtaact |
426 |
Q |
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| T |
1632641 |
gttcgagaaagagaatacaagagaaaattgatagaaaatgaggaaggggaaggggtaact |
1632700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 256 - 429
Target Start/End: Original strand, 44769325 - 44769502
Alignment:
| Q |
256 |
ggtataacaaattaaatctaatagaccattgaaaagaattcttttattaaatcgctagtagagttaattatta-gagtgta--taagtagtgcaacaagt |
352 |
Q |
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| T |
44769325 |
ggtataacaaattaaatctaaaaggccatcgaaaataattcttttattaaatcgctggtagagttaattactacttgtataagtaagtagtacaacaagt |
44769424 |
T |
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| Q |
353 |
tg---gtgagcaatggagttcgagagagagaatacaagagaaaattgatagaaagggaggaaggagaaggggtaactagt |
429 |
Q |
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| T |
44769425 |
tgtgtctgagcaaaggagtt--tgagagagaatacacgagaaaactgatagagaaggaggaaggagaaggggtaactagt |
44769502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 275
Target Start/End: Original strand, 1632287 - 1632318
Alignment:
| Q |
244 |
aatttgttatatggtataacaaattaaatcta |
275 |
Q |
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| T |
1632287 |
aatttgttatatggtataacaaattaaatcta |
1632318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 23637807 - 23637888
Alignment:
| Q |
93 |
ttttctaatttattaattgtatatcattttaaaattagtagaaacaaaatcctcacattaccattgatgcgtcgtttgagcac |
175 |
Q |
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| T |
23637807 |
ttttctaatttattaattgtatatcgtttgaaa-ttagtagaaacaaaatcctcacattaccatggatgcatcatttgagcac |
23637888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 36001425 - 36001506
Alignment:
| Q |
93 |
ttttctaatttattaattgtatatcattttaaaattagtagaaacaaaatcctcacattaccattgatgcgtcgtttgagcac |
175 |
Q |
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| T |
36001425 |
ttttctaatttattaattgtatatcgtttgaaa-ttagtagaaacaaaatcctcacattaccatggatgcatcatttgagcac |
36001506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 23638109 - 23638176
Alignment:
| Q |
356 |
tgagcaatggagttcgagagagagaatacaagagaaaattgatagaaagggaggaaggagaaggggta |
423 |
Q |
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| T |
23638109 |
tgagcaatggagtacgagagagagaatacatgagagaactgatagataaggaggaagaagaaggggta |
23638176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 423
Target Start/End: Original strand, 36001748 - 36001815
Alignment:
| Q |
356 |
tgagcaatggagttcgagagagagaatacaagagaaaattgatagaaagggaggaaggagaaggggta |
423 |
Q |
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| T |
36001748 |
tgagcaatggagtacgagagagagaatacatgagagaactgatagataaggaggaagaagaaggggta |
36001815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 5578369 - 5578450
Alignment:
| Q |
93 |
ttttctaatttattaattgtatatcattttaaaattagtagaaacaaaatcctcacattaccattgatgcgtcgtttgagcac |
175 |
Q |
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| T |
5578369 |
ttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcac-ttaccatggatgcatcctttgagcac |
5578450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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