View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_11 (Length: 443)
Name: NF3415_low_11
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 21 - 443
Target Start/End: Complemental strand, 3093476 - 3093054
Alignment:
| Q |
21 |
gaaagtatcacattagattagatgtaacatgtctttaaaaagtaagtcataggtcaaagacatatcacactagtttgtaagaattgatttaaatcgaaca |
120 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
3093476 |
gaaagtctcacattagattagatgtaacatgtctttaaaaagtaagtcataggtcaaagacatatcgcactagtttgtaagaattgatttagatcgaaca |
3093377 |
T |
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| Q |
121 |
caaattttaaaatgtacctcgggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgccgctagcggcttcaatatagctgccaaagctgg |
220 |
Q |
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| T |
3093376 |
caaattttaaaatgtacctcgggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgccgctagcggcttcaatatagctgccaaagctgg |
3093277 |
T |
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| Q |
221 |
taatgccaacaacagaaatgagggaaacctctaccggagaaggagatgggacataaacagagttcattgggttatctgacattccttgtcctacaaatgg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093276 |
taatgccaacaacagaaatgagggaaacctctaccggagaaggagatgggacataaacagagttcattgggttatctgacattccttgtcctacaaatgg |
3093177 |
T |
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| Q |
321 |
ttgatgtaacactacactgatgttatgttgcttaaggtgatgtgctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093176 |
ttgatgtaacactacactgatgttatgttgcttaaggtgatgtgctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgat |
3093077 |
T |
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| Q |
421 |
actatgatctcattcttagtccc |
443 |
Q |
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| T |
3093076 |
actatgatctcattcttagtccc |
3093054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 42 - 443
Target Start/End: Complemental strand, 3084574 - 3084174
Alignment:
| Q |
42 |
atgtaacatgtctttaaaaagtaagtcataggtcaaagacatatcacactagtttgtaagaattgatttaaatcgaacacaaattttaaaatgtacctcg |
141 |
Q |
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||||| |||||||| |||||||| | ||| ||| |||||||||| |||||||||||||||||||||||| || ||||||||||| | |||||||||| | |
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| T |
3084574 |
atgtaccatgtcttgaaaaagtat-taataagtcgaagacatatcgcactagtttgtaagaattgatttagatggaacacaaattgttaaatgtaccttg |
3084476 |
T |
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| Q |
142 |
ggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgccgctagcggcttcaatatagctgccaaagctggtaatgccaacaacagaaatga |
241 |
Q |
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| T |
3084475 |
ggagtaaacattgtgaactcgcttccattactggtgaaggctgcaccgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatga |
3084376 |
T |
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| Q |
242 |
gggaaacctctaccggagaaggagatgggacataaacagagttcattgggttatctgacattccttgtcctacaaatggttgatgtaacactacactgat |
341 |
Q |
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|||| |||||||| || |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||||||| |
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| T |
3084375 |
gggagacctctacgggggaaggagacgggacataaacagcgttcattggattatctgacattccttgtcctaccaaaggttgatctaacactacactgat |
3084276 |
T |
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| Q |
342 |
gttatgttgcttaaggtgatgtgctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtc |
441 |
Q |
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||| |||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084275 |
gttgtgttccctaaggtgatgtcctgctccaattccactcaacatcagaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtc |
3084176 |
T |
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| Q |
442 |
cc |
443 |
Q |
| |
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|| |
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| T |
3084175 |
cc |
3084174 |
T |
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