View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_12 (Length: 425)
Name: NF3415_low_12
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 52580080 - 52580494
Alignment:
| Q |
1 |
ttagtatagctttggtcttaaagaaaatgtgaaatagaaaaatgttggcccaaatacatagcatcaaccgtcgcctagttgacatgaaacaagaagacgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52580080 |
ttagtatagctttggtcttaaagaaaatgtgaaatagaaaaatgttggcccaaatacatagcatcaaccgtcacctagttgacatgaaacaagaagacgt |
52580179 |
T |
|
| Q |
101 |
ttctttcgattatctgtataatgtatagagagacaaattcacagttacttgtataaattgtatttacataagtttataaaattcattatgattatatcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580180 |
ttctttcgattatctgtataatgtatagagagacaaattaacagttacttgtataaattgtatttacataagtttataaaattcattatgattatatcat |
52580279 |
T |
|
| Q |
201 |
catgtacaaaataaacattgtgcccactacaaaactttcaaaatttactatttgaggcacaagtttattattggttagtccaaaagaaaagcttagaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580280 |
catgtacaaaataaacattgtgcccactacaaaactttcaaaatttactatttgaggcacaagtttattattggttagtccaaaagaaaagcttagaatt |
52580379 |
T |
|
| Q |
301 |
gaatctttgcttgcagctacgccttgtaagttttggcttagtgcttcgtggagtttccactgcctcaggcttgaggtttaagcctaacatgttccacatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580380 |
gaatctttgcttgcagctacgccttgtaagttttggcttagtgcttcgtggagtttccactgcctcaggcttgaggtttaagcctaacatgttccacatc |
52580479 |
T |
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| Q |
401 |
aactccacatctctg |
415 |
Q |
| |
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||||||||||||||| |
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| T |
52580480 |
aactccacatctctg |
52580494 |
T |
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