View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_17 (Length: 378)
Name: NF3415_low_17
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 34650080 - 34650439
Alignment:
| Q |
19 |
caatgaccaccaccaaacaggttaatttacattgcatgatga---atgcacgtatattactataataataatatagatctcatctaataatttattatac |
115 |
Q |
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| T |
34650080 |
caatgaccaccaccaaacaggttaatttacattgcatgatgatgaatgcacgtatattactataa---taatatagatctcatctaataatttattatac |
34650176 |
T |
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| Q |
116 |
attgaatttgtgcagatggatgtagagagaaatgatcatgaaaaactgaagcatcttgggtttgtgagaattgctgctattcatgcttttgtttgcatgt |
215 |
Q |
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| T |
34650177 |
attgaatttgtgcagatggatgtagagagaaatgatcatgaaaaactgaagcatcttgggtttgtgagaattgctgctattcatgcttttgtttgcatgt |
34650276 |
T |
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| Q |
216 |
cgagtctgtatgactatgcaaaacaaaactcaggacctttgagatctgctgttggaaccgttgaaggtactgtcactacggttcttggtcctgtttacaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34650277 |
cgagtctgtatgactatgcaaaacaaaactcaggacctttgagatctgctgttggaaccgttgaaggtactgtcactaccgttcttggtcctgtttacaa |
34650376 |
T |
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| Q |
316 |
caaattcaagcctcttcctcaagatctccttgnnnnnnncgacaacaaggtctctttctatct |
378 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34650377 |
caaattcaagcctcttcctcaagatctccttgtttttttcgacaacaaggtctctttctatct |
34650439 |
T |
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