View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_18 (Length: 371)
Name: NF3415_low_18
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 28543615 - 28543273
Alignment:
| Q |
15 |
gatggttgattcaatagaagtaggatatattggaatttttctcctctaaattgattgaatattaagtnnnnnnnnnnnnnnnnntaaaggatgatatttc |
114 |
Q |
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| T |
28543615 |
gatggttgattcaatagaagtaggatatattggaattttcctcctctaaattgattgaatattaagtaaaaaaaataaa-----tcaaggatgatatttc |
28543521 |
T |
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| Q |
115 |
atcatacatccttgattactcactnnnnnnnttaaatgacaattaagtggaggaggataacccttggnnnnnnnnn----cttcttcaaatggctaaata |
210 |
Q |
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| T |
28543520 |
atcatacatccttgattactcactaaaaaaattaaatgacaattaagtggaggaggataacccttggttttttttttcttcttcttcaaatggctaaata |
28543421 |
T |
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| Q |
211 |
aatacctagtattccaaaaataaaagccaaacgatcatgatcatgaggatccatgtcttccttggtgttcttccttaaattttgagaaaaatagcgaaag |
310 |
Q |
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| T |
28543420 |
aatacctagtattccaaaaataaaagccaaacgatcatgatcatgaggatccatgtcttccttagtgttcttccttaggttttgagaaaaatagcgaaag |
28543321 |
T |
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| Q |
311 |
atttaaggattgctataggaaatttaagaaacctcaagggttgaggtt |
358 |
Q |
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| T |
28543320 |
atttagggattgctataggaaatttaagaaacctcaagcgttgaggtt |
28543273 |
T |
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