View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3415_low_19 (Length: 365)
Name: NF3415_low_19
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_19 |
 | |
|
| [»] chr7 (10 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 46494445 - 46494790
Alignment:
| Q |
20 |
atacggcacactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46494445 |
atacggcacactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaag |
46494544 |
T |
|
| Q |
120 |
acttgatcaaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46494545 |
acttgatcaaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtatcgccat |
46494644 |
T |
|
| Q |
220 |
aaccacgaagatcgggagccacagcccggtaaccgagagagccttgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46494645 |
aaccacgaagatcgggagccacagcccggtaaccgagagagccgagagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaa |
46494744 |
T |
|
| Q |
320 |
caggacaacaggtccttctttacctttttcagcaatatgcattttg |
365 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46494745 |
caggacaacaggtccttcttttcctttttcagcaatatgcattttg |
46494790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 46490147 - 46490492
Alignment:
| Q |
20 |
atacggcacactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaag |
119 |
Q |
| |
|
|||||| ||||| |||||||| |||||||| | ||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| || |
|
|
| T |
46490147 |
atacggaacactcagacacacgtaggctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaac |
46490246 |
T |
|
| Q |
120 |
acttgatcaaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccat |
219 |
Q |
| |
|
||| | ||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||| || || | | || || |||| |||||||||| |
|
|
| T |
46490247 |
actcggtcaacgccaagtgagtcgatgagagcaacgatgtcaccaaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccat |
46490346 |
T |
|
| Q |
220 |
aaccacgaagatcgggagccacagcccggtaaccgagagagccttgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaa |
319 |
Q |
| |
|
||||||| ||||| ||||| ||||| ||||||||||| ||||| |||| | ||||||||||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
46490347 |
aaccacggagatctggagcaacagcgcggtaaccgagggagccaagagcagaaatctggtggcgccatgaataccagagttcagggaagccatgaaggaa |
46490446 |
T |
|
| Q |
320 |
caggacaacaggtccttctttacctttttcagcaatatgcattttg |
365 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46490447 |
caggacaacgggtccttctttacctttctcagcaatatgcattttg |
46490492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 27 - 365
Target Start/End: Original strand, 46520382 - 46520720
Alignment:
| Q |
27 |
acactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgat |
126 |
Q |
| |
|
||||| ||||| ||||||||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
46520382 |
acactaagacaaacataggctttgattctttcagggcgaaacatgcaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggt |
46520481 |
T |
|
| Q |
127 |
caaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacg |
226 |
Q |
| |
|
|||| || || ||||||||||| ||||| || ||||| ||||||||||||||||| || ||| ||| ||| ||| |||| |||||||| || ||||| |
|
|
| T |
46520482 |
caacgccgagtgagtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacg |
46520581 |
T |
|
| Q |
227 |
aagatcgggagccacagcccggtaaccgagagagccttgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggaca |
326 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||| ||||| |||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
46520582 |
aagatctggagcaacagcacggtaaccgagggagccaagagcagcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaaca |
46520681 |
T |
|
| Q |
327 |
acaggtccttctttacctttttcagcaatatgcattttg |
365 |
Q |
| |
|
|| || |||||||| ||||| || ||||||||||||||| |
|
|
| T |
46520682 |
actggaccttcttttcctttctctgcaatatgcattttg |
46520720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 27 - 365
Target Start/End: Complemental strand, 46326816 - 46326478
Alignment:
| Q |
27 |
acactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgat |
126 |
Q |
| |
|
|||||||| |||||||||||||| | ||| ||||||||||||| |||||||||||||||| |||||||||| ||||||| | |||||||| ||||| | |
|
|
| T |
46326816 |
acactgaggcacacataggctttgattctttcagggcgaaacatacaaagataccaaccaatgatggcacccatatcatgaccaacaaggaaaacttgtt |
46326717 |
T |
|
| Q |
127 |
caaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacg |
226 |
Q |
| |
|
| || |||||| |||||||||| | ||||||||||||||| | ||| || ||| || ||| | | ||| || ||||| ||||| ||||| ||||| |
|
|
| T |
46326716 |
ccacaccaagcaagtcgatgagagaaacaatgtcaccaactacgtgaaaacatgtgtagctgctaatggaagacggaacatctgtgtcaccatagccacg |
46326617 |
T |
|
| Q |
227 |
aagatcgggagccacagcccggtaaccgagagagccttgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggaca |
326 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |
|
|
| T |
46326616 |
gagatcgggagcaacagcacggtaaccgagggatccgagagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaaca |
46326517 |
T |
|
| Q |
327 |
acaggtccttctttacctttttcagcaatatgcattttg |
365 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46326516 |
acaggtccttctttacctttctcagcaatatgcattttg |
46326478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 46478945 - 46479290
Alignment:
| Q |
20 |
atacggcacactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaag |
119 |
Q |
| |
|
|||||||||||| | ||| ||||| ||||| | | | ||||||||||| || |||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
46478945 |
atacggcacactcaaacaaacataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaac |
46479044 |
T |
|
| Q |
120 |
acttgatcaaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccat |
219 |
Q |
| |
|
||||| ||||| || || ||||||||||| ||||| || ||||| ||||||||||||||||| || ||| ||| ||| ||| |||| |||||||| | |
|
|
| T |
46479045 |
acttggtcaacgccgagtgagtcgatgagagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgt |
46479144 |
T |
|
| Q |
220 |
aaccacgaagatcgggagccacagcccggtaaccgagagagccttgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaa |
319 |
Q |
| |
|
| ||||||||||| ||||| ||||| ||||||||||| ||||| |||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
46479145 |
agccacgaagatctggagcaacagcacggtaaccgagggagccaagagcagcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaa |
46479244 |
T |
|
| Q |
320 |
caggacaacaggtccttctttacctttttcagcaatatgcattttg |
365 |
Q |
| |
|
|| ||||| || |||||||| ||||| || ||||||||||||||| |
|
|
| T |
46479245 |
caaaacaactggaccttcttttcctttctctgcaatatgcattttg |
46479290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 27 - 365
Target Start/End: Complemental strand, 46323111 - 46322773
Alignment:
| Q |
27 |
acactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgat |
126 |
Q |
| |
|
||||||||||| ||||||||||| | ||| ||||||||||||| |||||| |||||||||| ||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
46323111 |
acactgagacaaacataggctttgattctttcagggcgaaacatgcaaaggtaccaaccaatgatggcaccccaatcatgagctacaagaaacacttgat |
46323012 |
T |
|
| Q |
127 |
caaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacg |
226 |
Q |
| |
|
|||| |||||| | || || || ||||| | ||||| || | ||| || ||| || ||| ||| ||| || | |||||||| ||||| ||||| |
|
|
| T |
46323011 |
caacgccaagcaaatctataagtgcaaccagatcacctacaatgtgaaaacctgtgtagctgcttattgaagatggagcctcagtgtcaccatagccacg |
46322912 |
T |
|
| Q |
227 |
aagatcgggagccacagcccggtaaccgagagagccttgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggaca |
326 |
Q |
| |
|
||||| ||||| || || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |
|
|
| T |
46322911 |
tagatccggagctacggcgcggtagccgagagagccgagagccgcaatctggtggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaaca |
46322812 |
T |
|
| Q |
327 |
acaggtccttctttacctttttcagcaatatgcattttg |
365 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46322811 |
acaggtccttctttacctttctcagcaatatgcattttg |
46322773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 27 - 365
Target Start/End: Original strand, 46532001 - 46532339
Alignment:
| Q |
27 |
acactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgat |
126 |
Q |
| |
|
||||||||||| ||||| ||||| | ||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| || ||||| | |
|
|
| T |
46532001 |
acactgagacagacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggt |
46532100 |
T |
|
| Q |
127 |
caaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacg |
226 |
Q |
| |
|
|||| |||||| | || || || ||||||| |||||| || | ||| || || || ||| ||| ||| || | || ||||| ||||| ||||| |
|
|
| T |
46532101 |
caacaccaagcaaatctataagtgcaacaaggtcacctacaatgtgaaaaccagtgtagctgcttattgaagatggagcctcggtgtcaccatagccacg |
46532200 |
T |
|
| Q |
227 |
aagatcgggagccacagcccggtaaccgagagagccttgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggaca |
326 |
Q |
| |
|
||||| ||||| || || ||||||||||| ||||| |||| |||| ||||||||||| || ||||||||||| ||||| || |||||||||| |||| |
|
|
| T |
46532201 |
cagatctggagcaacggcgcggtaaccgagggagccaagagctacaatttggtggcgccatgaataccagagttctgggaagccatgaaggaacaagaca |
46532300 |
T |
|
| Q |
327 |
acaggtccttctttacctttttcagcaatatgcattttg |
365 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46532301 |
acaggtccttcttttcctttttcagcaatatgcattttg |
46532339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 27 - 365
Target Start/End: Original strand, 46524448 - 46524786
Alignment:
| Q |
27 |
acactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgat |
126 |
Q |
| |
|
||||||||||| ||||| ||||| | ||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||| || ||||||| |
|
|
| T |
46524448 |
acactgagacagacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagcaacaagaaacacttgat |
46524547 |
T |
|
| Q |
127 |
caaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacg |
226 |
Q |
| |
|
|||| || || | || || || ||||||| ||||| || | ||| || ||| || || | || ||| || |||| ||||| ||||| ||||| |
|
|
| T |
46524548 |
caacacccagaaaatctataagtgcaacaagatcacctactatgtgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagccacg |
46524647 |
T |
|
| Q |
227 |
aagatcgggagccacagcccggtaaccgagagagccttgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggaca |
326 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| |||| |||| |||||||||||||||| || ||||||||||| ||||| || |||||||||| |||| |
|
|
| T |
46524648 |
gagatcgggagcaacagcacggtagccgagggagctgagagctacaatctggtggcgccatgaataccagagttctgggaagccatgaaggaacaagaca |
46524747 |
T |
|
| Q |
327 |
acaggtccttctttacctttttcagcaatatgcattttg |
365 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46524748 |
acaggtccttctttacctttctcagcaatatgcattttg |
46524786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 27 - 365
Target Start/End: Original strand, 46516741 - 46517079
Alignment:
| Q |
27 |
acactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgat |
126 |
Q |
| |
|
|||||||| || ||||| || || ||| ||||||| |||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
46516741 |
acactgaggcaaacataagccttgactttctcaggacgaaacaaacaaagataccaaccaatgatagcaccccaatcatgagccacaaggaaaacttggt |
46516840 |
T |
|
| Q |
127 |
caaccccaagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtgtcgccataaccacg |
226 |
Q |
| |
|
| || || || ||||| || || ||||| || ||||||||||| || || ||||| || || | || ||| |||| |||||||||| || || |||| |
|
|
| T |
46516841 |
ccacacccagtgagtcaattagagcaacgatatcaccaaccaaatgtaaaattgtgtagctactaactgaagtgggagcatcagtgtcaccgtagccaca |
46516940 |
T |
|
| Q |
227 |
aagatcgggagccacagcccggtaaccgagagagccttgagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggaca |
326 |
Q |
| |
|
||||| |||||||| | ||||| || || |||| |||| |||||||||||||||| |||||||||| |||||| || || |||||||||| || |
|
|
| T |
46516941 |
gagatctggagccacggtgcggtagccaagggagctgagagcaacaatctggtggcgccatgagtaccagatttcaggaaaaccatgaaggaacaatact |
46517040 |
T |
|
| Q |
327 |
acaggtccttctttacctttttcagcaatatgcattttg |
365 |
Q |
| |
|
| ||||||||||| ||||| || || | |||||||||| |
|
|
| T |
46517041 |
attggtccttcttttcctttctctgcgacatgcattttg |
46517079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 46464833 - 46464979
Alignment:
| Q |
33 |
agacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaaccc |
132 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| | |||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
46464833 |
agacaaacataggctttgactctttcaggacgaaacaaaca--gataccaaccagttaaggcaccccaatcatgagcaacaaaaaagacttgatcaaccc |
46464930 |
T |
|
| Q |
133 |
caagcgagtcgatgagcgcaacaatgtcaccaaccaagtggaagattgt |
181 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
46464931 |
caagtgagtctatgagagcaacgatgtcaccaactaagtggaagattgt |
46464979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 7475570 - 7475429
Alignment:
| Q |
27 |
acactgagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgat |
126 |
Q |
| |
|
||||||||||| ||||||||||| | ||| |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
7475570 |
acactgagacaaacataggctttgattctttcagggcgaaacgtgcaaaggtaccaaccaatgatggcaccccaatcatgagccacaagaaacacttgat |
7475471 |
T |
|
| Q |
127 |
caaccccaagcgagtcgatgagcgcaacaatgtcaccaacca |
168 |
Q |
| |
|
|||| ||||| | || || || ||||||| ||||||||||| |
|
|
| T |
7475470 |
caacaccaagaaaatctataagtgcaacaaggtcaccaacca |
7475429 |
T |
|
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