View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_2 (Length: 728)
Name: NF3415_low_2
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 25 - 573
Target Start/End: Complemental strand, 34868106 - 34867558
Alignment:
| Q |
25 |
gataagggctagtttgaaatgtcacgtgaagtgtgttttggataacatgtttgtgttttgcaaatactctgatgaaagatgtgtaatgtgcaattatgat |
124 |
Q |
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| T |
34868106 |
gataagggctagtttgaaatgtcacgtgaagtgtgttttggataacatgtttgtgttttggaaatactcagatgaaagatgtgtaatgtgcaattatgat |
34868007 |
T |
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| Q |
125 |
atcattttcatttgaataggaattataacatttatatcatgaaacacagaaacggacactagacatgatatagacacggacacgtcgacacgaagaatgg |
224 |
Q |
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| T |
34868006 |
atcattttcatttgaataggaattataacatttatatcatgaaacacagaaacggacactagacatgatatagacacggacacgtcgacaccaagaatgg |
34867907 |
T |
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| Q |
225 |
tttgggaaaatgaaatcattcaatataatcacatgtgtcagtgttggacacaaatacgtgtcggtgctacatagcatttatgtgtagagagtggtgttat |
324 |
Q |
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| T |
34867906 |
tttgggaaaatgaaatcattcaatataatcacatgtgtcagtgttggacacaaatacgtgtcggtgctacatagcatttatgtgtagagagtggtgttat |
34867807 |
T |
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| Q |
325 |
ggtttgtcaaggttaataagacaagaatcaggtttggatttggcaaatttgaaaccaaatctgagtcctgtatctaaaatgattttggggaattctgtgt |
424 |
Q |
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| T |
34867806 |
ggtttgtcaaggttgataagacaagaatcaagtttggatttggcaaatttgaaaccaaatctaagtcctgtatctaaaatgattttggggaattctgcgt |
34867707 |
T |
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| Q |
425 |
aaaactgaatcgaggatagaatcagtaaaatcaccctgttaatctgccatgtttcagtattgagcttgatttttgaggttgtatattgttttcactcaga |
524 |
Q |
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| T |
34867706 |
aaaactgaatcgaggatagaatcagtaaaatcaccctgttaatctgccatgtttcagtattgagcttgatttttgagtttgtatattgttttcactcaga |
34867607 |
T |
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| Q |
525 |
taacaccgaaatgatccttaaaatctcatgccatatattgattgtgaca |
573 |
Q |
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| T |
34867606 |
taacaccgaaatgatccttaaaatctcatgccacatattgattgtgaca |
34867558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 571 - 711
Target Start/End: Complemental strand, 34867199 - 34867059
Alignment:
| Q |
571 |
acatgttttaaaatatgcaaaaccctgtcaaggttgaactgcttctaaaggcagaattattttctattcgtcatgctgttttcgataaagattttaggca |
670 |
Q |
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| T |
34867199 |
acatgttttaaaatatgcaaaaccctgtcaaggttgaactgcttctaaaggcagaattattttctattcgtcatgctgttttcgataaagattttaggca |
34867100 |
T |
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| Q |
671 |
acgcctaccctacttcactgatcttgttgaagggataaatt |
711 |
Q |
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| T |
34867099 |
acgcctaccctacttcactgatcctgttgaagggataaatt |
34867059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 9024248 - 9024178
Alignment:
| Q |
198 |
acacggacacgtcgacacgaagaatggtttgggaaaatgaaatcattcaatataatcacatgtgtcagtgt |
268 |
Q |
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| T |
9024248 |
acacggacacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt |
9024178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 42874536 - 42874588
Alignment:
| Q |
225 |
tttgggaaaatgaaatcattcaatataatcacatgtgtcagtgttggacacaa |
277 |
Q |
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| T |
42874536 |
tttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttggacacaa |
42874588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 596 - 686
Target Start/End: Original strand, 51856675 - 51856765
Alignment:
| Q |
596 |
tgtcaaggttgaactgcttctaaaggcagaattattttctattcgtcatgctgttttcgataaagattttaggcaacgcctaccctacttc |
686 |
Q |
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| T |
51856675 |
tgtcatggttgaagtgcatccaaaggcaccatgattttctacttgtcatgttgttttttattaagtttttaggcaacgcctaccatacttc |
51856765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 6736445 - 6736494
Alignment:
| Q |
166 |
aaacacagaaacggacactagacatgatatagacacggacacgtcgacac |
215 |
Q |
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| T |
6736445 |
aaacacaaacacggacactagacatgacaaagacactgacacgtcgacac |
6736494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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