View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_23 (Length: 321)
Name: NF3415_low_23
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 41075681 - 41075977
Alignment:
| Q |
8 |
gagcacagagttaatttatgattaagtacttaattaagttgtttattccaacactctccaagtgtcacccgttcaaatttattttcctgtactttttgtt |
107 |
Q |
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| T |
41075681 |
gagcacaaagttaatttatgattaagtacttaattaagttgtttatttcaacactctccaagtgtcacccgttcaaatttattttcctgtactttttgtt |
41075780 |
T |
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| Q |
108 |
aacaaagaaaatcttacaaatgccctagcaaatgctgtgaattgcagggtgtgccattcatgactcatataatataagacatgtgcttaaattgtataat |
207 |
Q |
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| T |
41075781 |
aacaaagaaaatcttacaaatgccctagcaaatgctgtgaattgcagggtgtgccattcatgactcatataatataagacatgtgcttaaattgtataat |
41075880 |
T |
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| Q |
208 |
aatatgctttaatcgttcgtttgtatcacattatgtaatatgttctaacaccttttatgtctgtcttatctttttcttgaactttttatgtttatac |
304 |
Q |
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| T |
41075881 |
aatatgctttaatcgttcgtttgtatcacattatgtaatatgttctaacaccttttatgtctgtcttatctttttcttgaactttttatgtttatac |
41075977 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 50191178 - 50191123
Alignment:
| Q |
85 |
tttattttcctgtactttttgttaacaaagaaaatcttacaaatgccctagcaaatg |
141 |
Q |
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| T |
50191178 |
tttatttttctgtacttttggttaacaaagagaatcttacaaatgccc-agcaaatg |
50191123 |
T |
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