View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_26 (Length: 306)
Name: NF3415_low_26
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 32505771 - 32506067
Alignment:
| Q |
9 |
agcacagaggagaacatcgctgttacatcttaatggaatattgtatctacaagtatttcgacgttcaagtcaattttttattaagatgaatgtaacgaaa |
108 |
Q |
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| T |
32505771 |
agcacggaggagagcatcactgttacatcttaatggaatgttgtatctacaagtatttcgactttcaagtcaattttttattaagatgaatgtaacgaaa |
32505870 |
T |
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| Q |
109 |
tgaaatgtgtacttttctcctagtgcaaaatgtccgttgtcctcgagggatttgtgctgtaatcggcacatcaccctctaattttcatcatgtggtaatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32505871 |
tgaaatgtgtacttttctcctagtgcaaaatgtctgttgtcctcgagggatttgcgctgtgatcggcacatcaccctctaattttcatcatgtggtaatt |
32505970 |
T |
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| Q |
209 |
gattgatggggagcaatataacttgcatgcaccctcacagtagagtttctatcctacaatggacccgagcacgtaacacgtgcaccatgcattcacac |
306 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32505971 |
aattgat-gggagcaatataacttgcatgcaccctcacagtagagtttctatcctacaatggacccgagcacgtaacacgtgtaccatgcattcacac |
32506067 |
T |
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