View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_31 (Length: 284)
Name: NF3415_low_31
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 10120079 - 10120329
Alignment:
| Q |
18 |
aatctactcttagctagagatattgtattatgagaagagttagaatgttaaatggttattaccgttagtggtttatcagctctataagagtatcaacgta |
117 |
Q |
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| T |
10120079 |
aatctactcttagctagagatattgtattatgagaagagttagaatgttaaatggttattaccgttagtggtttatcagctctataagagtatcaacata |
10120178 |
T |
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| Q |
118 |
tctcattcataatcaattcaatatgattctatttgannnnnnnnnnnnnncaagttctaaagcatcccatttccttgtttcctacattaattagtgaaag |
217 |
Q |
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| T |
10120179 |
tctcattcataatcaattcaatatgattctatttgattttttttctttttcaagttctaaagcatcccttttccttgtttcctacattaattagtgaaag |
10120278 |
T |
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| Q |
218 |
acaagagactcttgtctgcaatgtgttagctgcaactcaaaagtggtgcca |
268 |
Q |
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| T |
10120279 |
acaagagactcttgtctgcaatgtgttagctgcaactcaaaagtggtgcca |
10120329 |
T |
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