View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_36 (Length: 262)
Name: NF3415_low_36
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 3916161 - 3916394
Alignment:
| Q |
11 |
caaaggccaaaacaaacaaagtttataccaaaacaagcaagttataaacgtcggcggcggtggtaacggaaaacctccatacccttcgggttcgtaaaca |
110 |
Q |
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| T |
3916161 |
caaaggccaaaacaaacaaagtttataccaaaacaagcaagttataaacgtcggcggcggtggtaacggaaaacctccatacccttcgggttcgtaaaca |
3916260 |
T |
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| Q |
111 |
cttccatcctttggtggttcagctcctctaccggcagcttcggtgtgtccgttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatgg |
210 |
Q |
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| T |
3916261 |
cttccatcctttggtggttcagctcctctaccggcagcttcgatgtggccgttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatgg |
3916360 |
T |
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| Q |
211 |
gttttgccatagtgtatataagttactcttgaag |
244 |
Q |
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| T |
3916361 |
tttttgccatagtgtatataagttactcttgaag |
3916394 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 5398604 - 5398543
Alignment:
| Q |
162 |
ttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatgggttttgccatagtgta |
226 |
Q |
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| T |
5398604 |
ttcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcag---tggattttgccatagtgta |
5398543 |
T |
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