View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3415_low_37 (Length: 254)

Name: NF3415_low_37
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3415_low_37
NF3415_low_37
[»] chr1 (2 HSPs)
chr1 (25-188)||(10121639-10121804)
chr1 (12-56)||(50797788-50797832)
[»] chr3 (1 HSPs)
chr3 (19-53)||(275226-275260)
[»] chr6 (1 HSPs)
chr6 (19-56)||(3180029-3180066)
[»] chr8 (1 HSPs)
chr8 (12-56)||(29107992-29108036)
[»] chr5 (1 HSPs)
chr5 (12-56)||(14206397-14206441)
[»] chr4 (1 HSPs)
chr4 (13-53)||(12387685-12387725)
[»] chr2 (1 HSPs)
chr2 (12-56)||(19695710-19695754)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 10121804 - 10121639
Alignment:
Q  25 aataaatgattgtacaagtatcatttctctttcgctttaagcctttgtgt--caatctcttacattagaaccattcacatcaaggagggttttttagaca 122  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||||  |  |||||| ||||||||||||||||||||||||||||||||||||||    
T  10121804 aataaatagttgtacaaatatcatttctctttcgctttaagcctttgtgtgtctctctcttgcattagaaccattcacatcaaggagggttttttagaca 10121705  T
Q  123 cataacacgggatcatttctccaaataattaggaaattgcttttaacaaatcgcttgtgtgcatga 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10121704 cataacacgggatcatttctccaaataattaggaaattgcttttaacaaatcgcctgtgtgcatga 10121639  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 50797832 - 50797788
Alignment:
Q  12 agagaaggttgtcaataaatgattgtacaagtatcatttctcttt 56  Q
    |||||| |||||||  |||||||||||||| ||||||||||||||    
T  50797832 agagaaagttgtcacaaaatgattgtacaaatatcatttctcttt 50797788  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 275260 - 275226
Alignment:
Q  19 gttgtcaataaatgattgtacaagtatcatttctc 53  Q
    ||||||||||||||||||||||| |||||||||||    
T  275260 gttgtcaataaatgattgtacaaatatcatttctc 275226  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 3180029 - 3180066
Alignment:
Q  19 gttgtcaataaatgattgtacaagtatcatttctcttt 56  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  3180029 gttgtcaaaaaatgattgtacaaatatcatttctcttt 3180066  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 29108036 - 29107992
Alignment:
Q  12 agagaaggttgtcaataaatgattgtacaagtatcatttctcttt 56  Q
    |||||| ||||| || |||||||||||||| ||||||||||||||    
T  29108036 agagaaagttgttaaaaaatgattgtacaaatatcatttctcttt 29107992  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 14206441 - 14206397
Alignment:
Q  12 agagaaggttgtcaataaatgattgtacaagtatcatttctcttt 56  Q
    |||||| |||||||| ||||| |||||||| ||||||||||||||    
T  14206441 agagaaagttgtcaaaaaatggttgtacaaatatcatttctcttt 14206397  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 12387685 - 12387725
Alignment:
Q  13 gagaaggttgtcaataaatgattgtacaagtatcatttctc 53  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  12387685 gagaaagttgtcaaaaaatgattgtacaaatatcatttctc 12387725  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 19695710 - 19695754
Alignment:
Q  12 agagaaggttgtcaataaatgattgtacaagtatcatttctcttt 56  Q
    |||||| |||||||| || ||||||||||| ||||||||||||||    
T  19695710 agagaaagttgtcaaaaagtgattgtacaaatatcatttctcttt 19695754  T

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