View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3415_low_42 (Length: 246)
Name: NF3415_low_42
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_42 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 11468479 - 11468259
Alignment:
| Q |
10 |
tggtgaatcaacttgttttgcaccacttgttaagggaattcttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468479 |
tggtgaatcaacttgttttgcaccacttgttaagggaattcttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaag |
11468380 |
T |
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| Q |
110 |
gatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattctgaatctgataaacttagtttgtttcaaggggccatgg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
11468379 |
gatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatgg |
11468280 |
T |
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| Q |
210 |
cagctgattcacaaatgttta |
230 |
Q |
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||||||||||||||||||||| |
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| T |
11468279 |
cagctgattcacaaatgttta |
11468259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 11522982 - 11523202
Alignment:
| Q |
10 |
tggtgaatcaacttgttttgcaccacttgttaagggaattcttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaag |
109 |
Q |
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| T |
11522982 |
tggtgaatcaacttgttttgcaccacttgttaagggaattcttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaag |
11523081 |
T |
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| Q |
110 |
gatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattctgaatctgataaacttagtttgtttcaaggggccatgg |
209 |
Q |
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| T |
11523082 |
gatcttgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatgg |
11523181 |
T |
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| Q |
210 |
cagctgattcacaaatgttta |
230 |
Q |
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| T |
11523182 |
cagctgattcacaaatgttta |
11523202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 11445484 - 11445274
Alignment:
| Q |
15 |
aatcaacttgttttgcaccacttgttaagggaattcttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatct |
114 |
Q |
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||||||| ||||| ||||| |||||| ||| | |||||||||||| |||| | ||||||||||||||||||||||| || | ||||| ||||| || |
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| T |
11445484 |
aatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtggcactcctctaagaaatggctcactgaggacaaggaact |
11445385 |
T |
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| Q |
115 |
tgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattctgaatctgataaacttagtttgtttcaaggggccatggcagct |
214 |
Q |
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|| | ||| || |||| || |||||||||| ||| ||||||||||||| ||||||||||| |||| ||| ||||||||| ||| ||||| ||| |
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| T |
11445384 |
cagcctatttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgct |
11445285 |
T |
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| Q |
215 |
gattcacaaat |
225 |
Q |
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| T |
11445284 |
gattctcaaat |
11445274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 11547606 - 11547816
Alignment:
| Q |
15 |
aatcaacttgttttgcaccacttgttaagggaattcttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatct |
114 |
Q |
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||||||| ||||| ||||| |||||| ||| | |||||||||||| |||| | ||||||||||||||||||||||| || | ||||| ||||| || |
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| T |
11547606 |
aatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtggcactcctctaagaaatggctcactgaggacaaggaact |
11547705 |
T |
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| Q |
115 |
tgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattctgaatctgataaacttagtttgtttcaaggggccatggcagct |
214 |
Q |
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|| | ||| || |||| || |||||||||| ||| ||||||||||||| ||||||||||| |||| ||| ||||||||| ||| ||||| ||| |
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| T |
11547706 |
cagcctatttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgct |
11547805 |
T |
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| Q |
215 |
gattcacaaat |
225 |
Q |
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| T |
11547806 |
gattctcaaat |
11547816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 11507411 - 11507585
Alignment:
| Q |
51 |
ttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttt |
150 |
Q |
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| T |
11507411 |
ttcatccatgtcgtctgaacatatggtactcctctacgaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttg |
11507510 |
T |
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| Q |
151 |
taactttcttaacaaagattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaat |
225 |
Q |
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| T |
11507511 |
ggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaat |
11507585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 34784321 - 34784385
Alignment:
| Q |
155 |
tttcttaacaaagattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattc |
219 |
Q |
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| T |
34784321 |
tttcttaacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattc |
34784385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 2068 - 2242
Alignment:
| Q |
51 |
ttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatcttgcactttatgaaagtgcaatgggggagacattttt |
150 |
Q |
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||||||||||| |||| | || ||| ||||||||| ||||||| || | ||||||||||| || || | ||| || |||| || |||||||||| |
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| T |
2068 |
ttcatccatgtcgtctgaacatatggtactcctctacgaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttg |
2167 |
T |
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| Q |
151 |
taactttcttaacaaagattctgaatctgataaacttagtttgtttcaaggggccatggcagctgattcacaaat |
225 |
Q |
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||| ||||||||||||| ||||||||||| |||| ||| ||||||||| ||| ||||| |||||||| ||||| |
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| T |
2168 |
ggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaat |
2242 |
T |
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