View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3415_low_45 (Length: 239)
Name: NF3415_low_45
Description: NF3415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3415_low_45 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 2766130 - 2765907
Alignment:
| Q |
16 |
aaaaagtaatgcatgcattgaatcatatgtgaaaataatgggatcgtagtgtcagatatcatacacatgtgagagaaagagaacatagttaagttcatga |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2766130 |
aaaaagttatgcatgcattgaatcatatgtgaaaacaatgggatcgtagtgtcagatatcatacacatgtgagagaaagagaacatagttaagttcatga |
2766031 |
T |
|
| Q |
116 |
ggtaaatgctcgttaaaaaacatcttgattggtaaaatatagtatggttcagtgtgtacacaataatcctatttgtagagtaagggtgcagtaactaata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
2766030 |
ggtaaatgctcgttaaaaaacatcttgattggtaaaagatagtatggttcggtgtgtacacaataatcctacttgtagagtaagggtgcactaactaata |
2765931 |
T |
|
| Q |
216 |
aagtaactgacccgtatctactcc |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2765930 |
aagtaactgacccgtatctactcc |
2765907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University